Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CAP2UW1_RS20720 Genome accession   NC_013194
Coordinates   4738476..4739714 (-) Length   412 a.a.
NCBI ID   WP_015768571.1    Uniprot ID   A0A9D8KSB9
Organism   Candidatus Accumulibacter phosphatis     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4733476..4744714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAP2UW1_RS24180 (CAP2UW1_4162) - 4733864..4734307 (-) 444 WP_015768565.1 barstar family protein -
  CAP2UW1_RS20695 (CAP2UW1_4163) - 4734304..4734711 (-) 408 WP_015768566.1 ribonuclease domain-containing protein -
  CAP2UW1_RS20700 (CAP2UW1_4164) aspS 4734718..4736520 (-) 1803 WP_015768567.1 aspartate--tRNA ligase -
  CAP2UW1_RS20705 (CAP2UW1_4165) - 4736544..4737191 (-) 648 WP_015768568.1 DUF502 domain-containing protein -
  CAP2UW1_RS20710 (CAP2UW1_4166) - 4737176..4737508 (-) 333 WP_015768569.1 FmdB family zinc ribbon protein -
  CAP2UW1_RS20715 (CAP2UW1_4167) pilD 4737616..4738476 (-) 861 WP_015768570.1 prepilin peptidase Machinery gene
  CAP2UW1_RS20720 (CAP2UW1_4168) pilC 4738476..4739714 (-) 1239 WP_015768571.1 type II secretion system F family protein Machinery gene
  CAP2UW1_RS20725 (CAP2UW1_4169) pilB 4739737..4741452 (-) 1716 WP_015768572.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CAP2UW1_RS26265 (CAP2UW1_4170) - 4741638..4741766 (-) 129 WP_291911647.1 hypothetical protein -
  CAP2UW1_RS20730 (CAP2UW1_4171) xerC 4741877..4742791 (-) 915 WP_015768574.1 tyrosine recombinase XerC -
  CAP2UW1_RS20735 (CAP2UW1_4172) - 4742802..4743455 (-) 654 WP_015768575.1 DUF484 family protein -
  CAP2UW1_RS20740 (CAP2UW1_4173) dapF 4743452..4744282 (-) 831 WP_015768576.1 diaminopimelate epimerase -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45013.15 Da        Isoelectric Point: 9.8212

>NTDB_id=35163 CAP2UW1_RS20720 WP_015768571.1 4738476..4739714(-) (pilC) [Candidatus Accumulibacter phosphatis]
MATALKLTKKAAPEVKEYVFLWEGKNKAGKVIRGEQRASSVTVVQATLRRQGVVVSKITKQRFRGGRKISEKDIALFTRQ
LATMMKAGVPLLQTFEIVGRGHDNPAVGKLLLDIKADVETGSSLSQAFRKYPLHFDLLYCNLVAAGEQAGILESLLDRLA
TYKEKMIAIKSKIKSALFYPVAIIVVAFIITAVIMIFVIPAFKEVFKSFGADLPAPTQIVIAMSDFVVDYWWALFGGIAG
SVFAFFYTWKRSEAMQIAFDRMFLRVPVFGDIIRKSVIARWTRTLATMFAAGVPLVESLESVGGAAGNYVYKVATRQIQS
EVSTGTSLTSAMQNVELFPNMVTQMVAIGEESGALDSMLGKVADFFEAEVDDAVEALSSLMEPIIMVVLGVLIGGMVIAM
YLPIFKLGAVVG

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=35163 CAP2UW1_RS20720 WP_015768571.1 4738476..4739714(-) (pilC) [Candidatus Accumulibacter phosphatis]
ATGGCGACTGCACTGAAGCTGACGAAAAAGGCCGCACCGGAAGTCAAGGAGTATGTTTTCCTCTGGGAAGGCAAGAACAA
GGCGGGCAAGGTCATCCGCGGCGAGCAGCGGGCCTCCAGCGTGACCGTCGTCCAGGCCACCCTGCGCCGCCAGGGGGTTG
TGGTCAGCAAGATCACCAAACAGCGCTTCCGCGGTGGCAGGAAGATCAGCGAGAAGGACATCGCACTGTTTACGCGGCAG
TTGGCGACGATGATGAAGGCCGGGGTGCCACTGCTGCAGACTTTCGAGATCGTCGGTCGCGGGCACGACAATCCAGCGGT
TGGCAAACTGTTGCTCGACATCAAGGCCGACGTGGAAACCGGCAGTTCGCTGTCGCAGGCCTTTCGCAAGTACCCGCTGC
ACTTTGATCTTCTTTACTGCAATCTGGTTGCTGCCGGCGAACAGGCCGGCATTCTCGAAAGCCTCCTTGATCGCCTGGCG
ACCTACAAGGAGAAGATGATCGCCATCAAGTCCAAGATCAAGTCGGCTCTGTTCTATCCCGTGGCGATCATTGTCGTCGC
CTTCATCATTACGGCCGTGATCATGATCTTCGTGATTCCGGCCTTCAAGGAGGTCTTCAAGAGTTTCGGTGCCGATCTGC
CGGCGCCCACACAGATCGTCATTGCCATGTCCGACTTTGTCGTCGACTACTGGTGGGCGTTGTTCGGAGGCATTGCCGGT
TCGGTCTTCGCTTTCTTCTACACGTGGAAACGCTCGGAAGCCATGCAGATCGCTTTCGATCGCATGTTCCTGCGAGTGCC
TGTCTTTGGCGACATCATCCGCAAGTCGGTAATTGCCCGCTGGACACGCACGCTGGCGACCATGTTTGCTGCCGGCGTCC
CTCTGGTCGAGTCCCTCGAATCCGTTGGCGGCGCCGCCGGCAACTATGTCTACAAGGTGGCGACCAGGCAGATCCAGAGC
GAGGTCAGCACCGGTACGAGCCTTACCTCGGCGATGCAGAACGTCGAACTCTTCCCGAACATGGTGACGCAGATGGTGGC
CATTGGCGAGGAATCCGGCGCCCTCGATTCGATGCTTGGCAAGGTTGCGGACTTCTTCGAGGCGGAGGTCGACGATGCGG
TCGAGGCGCTCTCGAGCCTGATGGAGCCGATCATCATGGTCGTCCTCGGGGTGCTGATCGGCGGCATGGTGATCGCCATG
TATCTGCCGATCTTCAAACTCGGCGCCGTTGTCGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(77-200)

Type II secretion system (T2SS), protein F (T2SSF)

(281-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.713

98.058

0.527
  pilG Neisseria gonorrhoeae MS11

53.149

96.359

0.512
  pilG Neisseria meningitidis 44/76-A

52.897

96.359

0.51
  pilC Legionella pneumophila strain ERS1305867

53.03

96.117

0.51
  pilC Acinetobacter baumannii D1279779

51.889

96.359

0.5
  pilC Acinetobacter baylyi ADP1

51.256

96.602

0.495
  pilC Vibrio campbellii strain DS40M4

39.277

100

0.396
  pilC Vibrio cholerae strain A1552

40.302

96.359

0.388

Multiple sequence alignment