Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYD   Type   Machinery gene
Locus tag   E3C75_RS01075 Genome accession   NZ_CP038020
Coordinates   207810..208238 (-) Length   142 a.a.
NCBI ID   WP_171815055.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ATCC 19258     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 202810..213238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3C75_RS01035 - 202948..203391 (-) 444 WP_011681680.1 hypothetical protein -
  E3C75_RS11415 - 203465..203890 (-) 426 WP_111679733.1 CPBP family intramembrane glutamic endopeptidase -
  E3C75_RS01045 - 204133..204330 (-) 198 WP_014727723.1 helix-turn-helix transcriptional regulator -
  E3C75_RS01050 - 204579..205772 (-) 1194 WP_084826168.1 acetate kinase -
  E3C75_RS01055 comYH 205828..206784 (-) 957 WP_023909974.1 class I SAM-dependent methyltransferase Machinery gene
  E3C75_RS01060 comGG 206829..207146 (-) 318 WP_023909975.1 competence type IV pilus minor pilin ComGG -
  E3C75_RS01065 comYF 207124..207561 (-) 438 WP_084825661.1 competence type IV pilus minor pilin ComGF Machinery gene
  E3C75_RS01070 comGE 207545..207838 (-) 294 WP_100262274.1 competence type IV pilus minor pilin ComGE -
  E3C75_RS01075 comYD 207810..208238 (-) 429 WP_171815055.1 competence type IV pilus minor pilin ComGD Machinery gene
  E3C75_RS01080 comYC 208198..208524 (-) 327 WP_023909980.1 competence type IV pilus major pilin ComGC Machinery gene
  E3C75_RS01085 comYB 208521..209621 (-) 1101 WP_133264040.1 competence type IV pilus assembly protein ComGB Machinery gene
  E3C75_RS01090 comYA 209503..210444 (-) 942 WP_014622005.1 competence type IV pilus ATPase ComGA Machinery gene
  E3C75_RS01095 - 210525..210887 (-) 363 WP_111679734.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15874.46 Da        Isoelectric Point: 10.4608

>NTDB_id=351380 E3C75_RS01075 WP_171815055.1 207810..208238(-) (comYD) [Streptococcus thermophilus strain ATCC 19258]
MRNMVVKAAQWPIRAFTLLESLMTLAVVVFLTLSLSGSVTGIFQQVEINLFYLRFEYLYRDSQRLASSEGSNVELQLTKN
KVSNGRSSLLIPKSIHLDKGQTLVFDAKGGNSSLTKIRFSSDKEVVTYLLNMGSGKYKKTIS

Nucleotide


Download         Length: 429 bp        

>NTDB_id=351380 E3C75_RS01075 WP_171815055.1 207810..208238(-) (comYD) [Streptococcus thermophilus strain ATCC 19258]
ATGCGAAACATGGTGGTGAAAGCCGCTCAGTGGCCAATTAGAGCTTTCACCTTGTTGGAGAGCCTGATGACGCTAGCAGT
GGTTGTCTTTCTCACTCTGAGTTTGTCAGGCTCAGTCACAGGTATTTTTCAGCAGGTCGAGATTAATCTTTTTTATCTGC
GTTTTGAGTACCTATATCGAGATAGTCAGCGCTTGGCATCATCGGAAGGATCTAATGTTGAATTGCAGTTAACTAAGAAT
AAGGTTAGTAATGGAAGGTCTAGTCTGCTTATTCCTAAAAGTATTCATCTGGATAAGGGGCAGACGCTAGTGTTTGATGC
TAAAGGAGGCAACTCTAGCCTCACGAAAATTCGTTTTTCAAGTGATAAGGAGGTGGTGACCTATCTGCTTAACATGGGCA
GTGGTAAATATAAAAAGACGATCTCTTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYD Streptococcus mutans UA140

52.672

92.254

0.486
  comYD Streptococcus mutans UA159

52.672

92.254

0.486
  comYD Streptococcus gordonii str. Challis substr. CH1

42.143

98.592

0.415
  comGD/cglD Streptococcus pneumoniae Rx1

43.307

89.437

0.387
  comGD/cglD Streptococcus pneumoniae D39

43.307

89.437

0.387
  comGD/cglD Streptococcus pneumoniae R6

43.307

89.437

0.387
  comGD/cglD Streptococcus mitis NCTC 12261

43.307

89.437

0.387
  comGD/cglD Streptococcus pneumoniae TIGR4

43.307

89.437

0.387
  comGD/cglD Streptococcus mitis SK321

42.52

89.437

0.38
  comGD Lactococcus lactis subsp. cremoris KW2

40.909

92.958

0.38

Multiple sequence alignment