Detailed information NTG0351379

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: E3C75_RS01065
• Genome accession: NZ_CP038020
• Coordinates: 207124..207561 (-)
• Length: 145 a.a.
• NCBI ID: WP_084825661.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain ATCC 19258
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 202124..212561

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E3C75_RS01030	-	202183..202845 (-)	663	WP_096811680.1	type II CAAX endopeptidase family protein	-
E3C75_RS01035	-	202948..203391 (-)	444	WP_011681680.1	hypothetical protein	-
E3C75_RS11415	-	203465..203890 (-)	426	WP_111679733.1	CPBP family intramembrane glutamic endopeptidase	-
E3C75_RS01045	-	204133..204330 (-)	198	WP_014727723.1	helix-turn-helix transcriptional regulator	-
E3C75_RS01050	-	204579..205772 (-)	1194	WP_084826168.1	acetate kinase	-
E3C75_RS01055	comYH	205828..206784 (-)	957	WP_023909974.1	class I SAM-dependent methyltransferase	Machinery gene
E3C75_RS01060	comGG	206829..207146 (-)	318	WP_023909975.1	competence type IV pilus minor pilin ComGG	-
E3C75_RS01065	comYF	207124..207561 (-)	438	WP_084825661.1	competence type IV pilus minor pilin ComGF	Machinery gene
E3C75_RS01070	comGE	207545..207838 (-)	294	WP_100262274.1	competence type IV pilus minor pilin ComGE	-
E3C75_RS01075	comYD	207810..208238 (-)	429	WP_171815055.1	competence type IV pilus minor pilin ComGD	Machinery gene
E3C75_RS01080	comYC	208198..208524 (-)	327	WP_023909980.1	competence type IV pilus major pilin ComGC	Machinery gene
E3C75_RS01085	comYB	208521..209621 (-)	1101	WP_133264040.1	competence type IV pilus assembly protein ComGB	Machinery gene
E3C75_RS01090	comYA	209503..210444 (-)	942	WP_014622005.1	competence type IV pilus ATPase ComGA	Machinery gene
E3C75_RS01095	-	210525..210887 (-)	363	WP_111679734.1	DUF1033 family protein	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16345.87 Da
• Isoelectric Point: 9.3928

>NTDB_id=351379 E3C75_RS01065 WP_084825661.1 207124..207561(-) (comYF) [Streptococcus thermophilus strain ATCC 19258]
MYLSSKLRAFTLLECLVALLVIAGSVQVYQGLTTVLVSNVKRVRQQENQDWLLFVQQMEAELEGCQLVKVEGNKLYVKQD
NQDLAFGLSSASDFRKTNADGRGYQPMLFDVKSSKVSQKNQIVTIQVTLKNGLQRSFIYAFEKTG

Nucleotide

• Length: 438 bp

>NTDB_id=351379 E3C75_RS01065 WP_084825661.1 207124..207561(-) (comYF) [Streptococcus thermophilus strain ATCC 19258]
ATGTATCTAAGCAGTAAGCTGCGTGCCTTTACCCTCTTGGAATGTCTAGTGGCCTTGTTAGTCATTGCTGGCTCAGTTCA
AGTTTATCAAGGGTTAACCACTGTACTTGTGAGTAATGTTAAGCGGGTAAGACAACAAGAAAACCAAGACTGGCTTCTAT
TTGTTCAACAAATGGAGGCAGAATTAGAAGGATGTCAGTTGGTCAAGGTAGAGGGGAACAAACTCTATGTCAAGCAGGAT
AATCAAGACTTGGCTTTTGGTCTTTCAAGTGCCTCTGATTTTCGAAAAACAAATGCTGATGGTCGAGGCTATCAACCAAT
GCTTTTCGATGTCAAATCTAGTAAGGTAAGTCAAAAGAACCAGATAGTTACCATCCAAGTGACTCTTAAAAATGGACTAC
AAAGGAGTTTTATTTATGCTTTTGAAAAAACAGGTTAG

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (40-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA140	58.156	97.241	0.566
comYF	Streptococcus mutans UA159	57.447	97.241	0.559
comGF/cglF	Streptococcus pneumoniae D39	50.714	96.552	0.49
comGF/cglF	Streptococcus pneumoniae Rx1	50.714	96.552	0.49
comGF/cglF	Streptococcus pneumoniae R6	50.714	96.552	0.49
comGF/cglF	Streptococcus pneumoniae TIGR4	50.714	96.552	0.49
comGF/cglF	Streptococcus mitis NCTC 12261	48.936	97.241	0.476
comGF/cglF	Streptococcus mitis SK321	48.227	97.241	0.469
comGF	Lactococcus lactis subsp. cremoris KW2	46.763	95.862	0.448