Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   AHTJR_RS01435 Genome accession   NZ_CP038009
Coordinates   309630..311762 (+) Length   710 a.a.
NCBI ID   WP_410169539.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain TJR01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 304630..316762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AHTJR_RS01415 (AHTJR_01415) comM 306594..307652 (+) 1059 WP_004641327.1 pilus assembly protein PilM Machinery gene
  AHTJR_RS01420 (AHTJR_01420) pilN 307652..308362 (+) 711 WP_410169532.1 PilN domain-containing protein Machinery gene
  AHTJR_RS01425 (AHTJR_01425) pilO 308292..309029 (+) 738 WP_134251340.1 type 4a pilus biogenesis protein PilO Machinery gene
  AHTJR_RS01430 (AHTJR_01430) pilP 309041..309568 (+) 528 WP_134251342.1 pilus assembly protein PilP Machinery gene
  AHTJR_RS01435 (AHTJR_01435) pilQ 309630..311762 (+) 2133 WP_410169539.1 type IV pilus secretin PilQ Machinery gene
  AHTJR_RS01440 (AHTJR_01440) aroK 311801..312343 (+) 543 WP_005087029.1 shikimate kinase AroK -
  AHTJR_RS01445 (AHTJR_01445) aroB 312363..313448 (+) 1086 WP_004641316.1 3-dehydroquinate synthase -
  AHTJR_RS01450 (AHTJR_01450) - 313464..314336 (+) 873 WP_005088508.1 hypothetical protein -

Sequence

Protein


Download         Length: 710 a.a.        Molecular weight: 77202.91 Da        Isoelectric Point: 8.1629

>NTDB_id=351228 AHTJR_RS01435 WP_410169539.1 309630..311762(+) (pilQ) [Acinetobacter haemolyticus strain TJR01]
MNRAFRQFSMGAVAIAVMQVASAQVNMTNIVPMSLADQGTEIRVMFNGLPPQPQAYQLEQPSRLILDFDKAKQTLKQSSI
PVATNEASSVEVAADDQRSRVIVNLKDAGAFTTRVEGNTFILKINAARPAVANSVTTTARQVQQGVSNIGFQRGNQGEGL
VVIDLLGSNTPVDVQQQGSKIVVRTMGNKIPTHLARRLNTNDFATPVASIDAYNDKGNGVITIQSAGSYEYMAYQAENKL
TISLKRPEEKSPLKAKSQTYTGNKISLDFQDIEVRRVLQLLADFTNINMVAADTVQGNITLRLKDVPWDQALDIVLKTKN
LDKRRNGNVIWIAPVSELIKAEEEEAKAIAQSVKLAPIQSEYIKLSYAKAADILKLIEDSRNSKTGASNRTANSDSLALE
SLLSSRGSAVADIRTNTLIVNDTAQNIDKIRKMVDLLDVSVKQVMIEARIVRASTDFTREMGVKWGILSQGITNNSDLLV
GGSDTTLWNLREPKRDSNTGGWKYDIERPDNLNVDLGAVTPGASRIAFGLISLSDFMLDLELSAVQADGFGEVISTPKVM
TADKQPAKIESGTKIPYSSSTGGGANAVPKTEFIDATLSLDVTPSITPDGKVMMKLNIAKDAPGAPTPTGQLTISKNSID
TNVLVDNGETVVLGGIFEQENISSQIKVPFLGDLPYVGRLFRRDLKTDNKRELLIFVTPRIVNDTLTRNH

Nucleotide


Download         Length: 2133 bp        

>NTDB_id=351228 AHTJR_RS01435 WP_410169539.1 309630..311762(+) (pilQ) [Acinetobacter haemolyticus strain TJR01]
ATGAATCGTGCATTCCGTCAATTTTCAATGGGTGCTGTCGCAATAGCAGTGATGCAGGTAGCATCAGCACAAGTGAACAT
GACCAACATTGTGCCAATGAGTTTGGCTGATCAGGGGACTGAAATTCGTGTCATGTTTAATGGTCTGCCACCACAGCCGC
AGGCATATCAACTTGAACAACCCTCTCGTTTAATTTTGGATTTTGATAAAGCTAAACAAACCTTAAAGCAGAGCTCTATT
CCTGTTGCAACCAATGAAGCCAGTTCAGTAGAAGTGGCTGCAGATGATCAGCGTTCTCGCGTGATTGTGAATTTGAAAGA
TGCAGGCGCTTTTACCACACGTGTAGAAGGTAATACCTTTATTCTAAAAATCAATGCCGCCCGTCCTGCTGTTGCTAACT
CTGTAACTACCACAGCTCGTCAAGTACAACAAGGCGTTTCAAATATTGGTTTCCAACGTGGCAATCAAGGTGAAGGTCTA
GTTGTGATTGATTTGTTGGGTAGTAATACGCCAGTAGATGTACAGCAGCAAGGGAGTAAAATCGTTGTGCGGACGATGGG
GAATAAAATTCCGACCCATTTAGCACGTCGTTTAAATACCAATGATTTCGCGACTCCTGTAGCAAGTATTGATGCCTATA
ATGATAAAGGTAATGGTGTGATTACCATTCAGTCTGCTGGTAGCTATGAATACATGGCTTATCAAGCTGAAAATAAACTG
ACGATTAGTTTAAAACGACCTGAAGAAAAATCACCATTAAAAGCAAAATCTCAAACTTATACTGGTAATAAGATTTCTTT
AGATTTCCAAGATATTGAAGTGCGTCGTGTGCTGCAGTTACTTGCTGATTTTACCAATATCAATATGGTGGCTGCTGATA
CGGTACAAGGGAATATTACTTTACGCCTAAAAGATGTGCCTTGGGATCAGGCTTTGGATATTGTCTTAAAGACCAAAAAT
CTAGATAAACGTCGTAATGGTAATGTGATATGGATCGCGCCAGTTTCAGAGTTGATTAAGGCTGAGGAAGAAGAGGCGAA
AGCCATTGCTCAAAGCGTAAAGCTTGCACCAATTCAATCTGAATATATCAAGCTGAGCTATGCAAAAGCGGCGGATATCT
TAAAATTGATTGAAGACTCTCGTAATAGCAAAACGGGTGCATCGAATCGGACAGCAAACTCAGATTCATTGGCTTTAGAG
AGTTTACTAAGTTCTCGTGGTAGTGCAGTCGCTGATATACGGACTAATACTTTAATCGTCAATGATACGGCCCAAAATAT
TGACAAGATCCGAAAAATGGTTGATCTATTAGATGTTTCAGTTAAACAGGTGATGATTGAAGCGCGTATTGTTCGAGCGA
GTACCGACTTTACCCGAGAGATGGGAGTCAAGTGGGGAATCTTATCTCAAGGTATTACCAACAATAGTGATTTGTTGGTA
GGGGGGAGTGACACAACATTATGGAATTTGAGAGAGCCAAAAAGAGATAGTAATACTGGTGGTTGGAAATATGATATTGA
ACGTCCTGATAATTTAAATGTAGATTTGGGTGCTGTAACACCTGGTGCAAGTCGTATCGCTTTTGGCTTAATTAGCCTCT
CTGACTTTATGTTGGATTTAGAACTTTCAGCAGTACAGGCGGATGGTTTTGGTGAGGTTATTTCAACGCCTAAAGTGATG
ACTGCCGATAAGCAACCTGCAAAGATCGAGTCAGGAACCAAAATTCCTTATTCATCTTCGACGGGTGGGGGCGCAAATGC
GGTACCTAAAACTGAGTTCATTGATGCAACTTTAAGCCTAGATGTGACTCCAAGTATCACGCCCGATGGAAAAGTCATGA
TGAAACTTAACATTGCAAAAGATGCACCTGGCGCACCAACGCCAACGGGTCAATTAACGATTAGTAAGAATTCAATTGAT
ACCAATGTTTTGGTTGATAATGGTGAAACTGTAGTGCTTGGTGGTATTTTTGAGCAGGAAAATATCAGCTCACAAATTAA
AGTGCCATTTTTAGGTGATCTTCCGTATGTGGGGCGACTTTTCCGTCGTGATCTGAAAACAGACAATAAACGTGAACTGC
TTATTTTTGTGACACCGAGAATTGTTAATGACACTTTGACCAGAAATCATTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(292-334)

Bacterial type II/III secretion system short domain (Secretin_N)

(362-443)

AMIN domain (AMIN)

(37-121)

Bacterial type II and III secretion system protein (Secretin)

(544-702)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

74.448

100

0.759
  pilQ Acinetobacter baumannii strain A118

74.309

100

0.758
  comQ Acinetobacter baylyi ADP1

71.827

100

0.725
  pilQ Pseudomonas aeruginosa PAK

39.208

100

0.404
  pilQ Legionella pneumophila strain ERS1305867

38.872

94.93

0.369
  pilQ Legionella pneumophila strain Lp02

38.724

94.93

0.368

Multiple sequence alignment