Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   AHTJR_RS01420 Genome accession   NZ_CP038009
Coordinates   307652..308362 (+) Length   236 a.a.
NCBI ID   WP_410169532.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain TJR01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 302652..313362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AHTJR_RS01405 (AHTJR_01405) - 302992..303810 (+) 819 WP_113996584.1 putative RNA methyltransferase -
  AHTJR_RS01410 (AHTJR_01410) ponA 303839..306430 (-) 2592 WP_134251338.1 penicillin-binding protein PBP1a -
  AHTJR_RS01415 (AHTJR_01415) comM 306594..307652 (+) 1059 WP_004641327.1 pilus assembly protein PilM Machinery gene
  AHTJR_RS01420 (AHTJR_01420) pilN 307652..308362 (+) 711 WP_410169532.1 PilN domain-containing protein Machinery gene
  AHTJR_RS01425 (AHTJR_01425) pilO 308292..309029 (+) 738 WP_134251340.1 type 4a pilus biogenesis protein PilO Machinery gene
  AHTJR_RS01430 (AHTJR_01430) pilP 309041..309568 (+) 528 WP_134251342.1 pilus assembly protein PilP Machinery gene
  AHTJR_RS01435 (AHTJR_01435) pilQ 309630..311762 (+) 2133 WP_410169539.1 type IV pilus secretin PilQ Machinery gene
  AHTJR_RS01440 (AHTJR_01440) aroK 311801..312343 (+) 543 WP_005087029.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26836.59 Da        Isoelectric Point: 8.2461

>NTDB_id=351225 AHTJR_RS01420 WP_410169532.1 307652..308362(+) (pilN) [Acinetobacter haemolyticus strain TJR01]
MAKINLLPWRDELREQRKKQFIAFCVGVAALGIASVFTAWMYFDHKLNDQEQANQFIVSTNQNLDVQLKSLEGLQERRNA
IIERMKLIQGLQGQRPVIVRLVDELVRVTPPTMYITKFTRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
SEEKKTKTVSSLVPRVEENYGSFVVTVDLGEIGTMVTTDPTPEVVVSATEGGCNETKRNERSQSRRRSCKEKENDS

Nucleotide


Download         Length: 711 bp        

>NTDB_id=351225 AHTJR_RS01420 WP_410169532.1 307652..308362(+) (pilN) [Acinetobacter haemolyticus strain TJR01]
ATGGCAAAGATTAACTTACTCCCTTGGCGTGATGAGCTAAGAGAACAAAGAAAGAAACAATTTATTGCATTTTGTGTTGG
GGTGGCTGCTTTAGGAATCGCATCTGTATTTACAGCATGGATGTATTTTGATCACAAGCTGAATGATCAAGAACAAGCAA
ACCAGTTTATTGTGAGTACCAATCAAAACTTAGATGTTCAACTGAAGTCATTAGAGGGATTGCAAGAGCGTCGAAATGCG
ATTATTGAACGCATGAAGTTGATTCAGGGATTGCAAGGACAACGACCAGTCATTGTACGTTTGGTTGATGAGTTGGTGCG
TGTAACCCCTCCAACAATGTACATCACTAAGTTTACGCGTACAGGTGATAAATTTACCATCGAAGGTAAGGCTGAAAGTC
CAAATACGGTTGCTGAGTTGTTACGAAATTTGGAAGCATCACCTTGGTATCGTAATGCATTTATGAATTCATTTTTGGCA
TCAGAAGAGAAAAAAACAAAAACGGTTAGTTCTTTGGTGCCCCGTGTTGAAGAGAATTATGGCAGTTTTGTTGTTACTGT
AGACTTGGGTGAAATTGGAACCATGGTGACAACGGATCCTACTCCTGAAGTGGTTGTATCAGCAACAGAGGGGGGGTGTA
ATGAGACCAAAAGAAATGAACGATCTCAATCAAGAAGGCGCAGCTGTAAAGAAAAAGAAAATGACAGTTGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

80.905

84.322

0.682
  comN Acinetobacter baylyi ADP1

73.077

88.136

0.644

Multiple sequence alignment