Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   GJV02_RS28470 Genome accession   NZ_CP046060
Coordinates   5970422..5970886 (-) Length   154 a.a.
NCBI ID   WP_023090842.1    Uniprot ID   A3RJ48
Organism   Pseudomonas aeruginosa strain 1811-18R001     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5965422..5975886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJV02_RS28445 - 5965707..5967917 (+) 2211 WP_010791804.1 hypothetical protein -
  GJV02_RS28450 - 5967914..5969062 (+) 1149 WP_015648033.1 DUF2793 domain-containing protein -
  GJV02_RS28455 - 5969059..5969346 (+) 288 WP_010791802.1 hypothetical protein -
  GJV02_RS28460 - 5969420..5969644 (+) 225 WP_003121473.1 DUF7364 domain-containing protein -
  GJV02_RS35310 - 5969692..5970348 (-) 657 WP_229637854.1 hypothetical protein -
  GJV02_RS28470 pilA 5970422..5970886 (-) 465 WP_023090842.1 pilin Machinery gene
  GJV02_RS28475 pilB 5971117..5972817 (+) 1701 WP_003107297.1 type IV-A pilus assembly ATPase PilB Machinery gene
  GJV02_RS28480 pilC 5972821..5974038 (+) 1218 WP_003161763.1 type II secretion system F family protein Machinery gene
  GJV02_RS28485 pilD 5974039..5974911 (+) 873 WP_023084740.1 type IV prepilin peptidase/methyltransferase PilD Machinery gene
  GJV02_RS28490 coaE 5974908..5975519 (+) 612 WP_003112838.1 dephospho-CoA kinase -
  GJV02_RS28495 yacG 5975516..5975716 (+) 201 WP_003094656.1 DNA gyrase inhibitor YacG -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16023.30 Da        Isoelectric Point: 9.0066

>NTDB_id=349814 GJV02_RS28470 WP_023090842.1 5970422..5970886(-) (pilA) [Pseudomonas aeruginosa strain 1811-18R001]
MKAQKGFTLIELMIVVAIIGILAAIAIPQYQDYTARTQVTRAVSEISALKTAAESAILEGKKLVSSDTPGNNEYDLGFTS
STLLTGSGKGQIKIDKADTATPEISGTLGNSSGKGIAGAVITVKRDDKGVWTCGITGSPTNWKTNYAPANCPKS

Nucleotide


Download         Length: 465 bp        

>NTDB_id=349814 GJV02_RS28470 WP_023090842.1 5970422..5970886(-) (pilA) [Pseudomonas aeruginosa strain 1811-18R001]
ATGAAAGCTCAGAAGGGTTTTACTCTGATCGAACTGATGATCGTGGTCGCGATCATCGGCATCCTGGCCGCCATTGCCAT
CCCGCAATACCAGGACTACACCGCCCGTACCCAGGTGACCCGTGCCGTGAGTGAAATCAGCGCGCTGAAGACCGCTGCGG
AGTCGGCGATTCTGGAAGGCAAGAAGCTCGTTTCCAGCGATACCCCCGGAAACAATGAATATGATCTTGGCTTTACCAGC
TCTACTCTGCTTACTGGTAGCGGTAAGGGGCAGATCAAGATTGACAAAGCTGATACCGCAACTCCGGAGATTTCTGGTAC
TCTGGGCAACTCTTCTGGTAAGGGTATCGCTGGCGCTGTCATCACTGTCAAGCGTGATGATAAAGGAGTATGGACCTGCG
GCATCACTGGTTCGCCGACCAACTGGAAAACCAACTACGCCCCGGCTAACTGCCCGAAATCCTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)

Pilin (bacterial filament) (Pilin)

(35-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3RJ48

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Acinetobacter baumannii strain A118

43.949

100

0.448
  pilA/pilAI Pseudomonas stutzeri DSM 10701

44.516

100

0.448
  pilA Pseudomonas aeruginosa PAK

41.139

100

0.422
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

41.447

98.701

0.409
  pilA Vibrio cholerae strain A1552

41.447

98.701

0.409
  pilA Vibrio cholerae C6706

41.447

98.701

0.409
  pilA/pilAII Pseudomonas stutzeri DSM 10701

40.94

96.753

0.396
  pilA Ralstonia pseudosolanacearum GMI1000

35.882

100

0.396

Multiple sequence alignment