Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   GJD94_RS19595 Genome accession   NZ_CP046003
Coordinates   3879005..3880390 (+) Length   461 a.a.
NCBI ID   WP_021570596.1    Uniprot ID   -
Organism   Escherichia coli strain 1916D6     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3874005..3885390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJD94_RS19570 (GJD94_19560) aroP 3874553..3875926 (+) 1374 WP_000969915.1 aromatic amino acid transporter AroP -
  GJD94_RS19575 (GJD94_19565) ampE 3875969..3876823 (-) 855 WP_000172005.1 beta-lactamase regulator AmpE -
  GJD94_RS19580 (GJD94_19570) ampD 3876820..3877371 (-) 552 WP_000923721.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  GJD94_RS19585 (GJD94_19575) nadC 3877459..3878352 (+) 894 WP_001135174.1 carboxylating nicotinate-nucleotide diphosphorylase -
  GJD94_RS19590 (GJD94_19580) pilA 3878555..3878995 (+) 441 WP_000360904.1 prepilin peptidase-dependent pilin Machinery gene
  GJD94_RS19595 (GJD94_19585) pilB 3879005..3880390 (+) 1386 WP_021570596.1 type II secretion system protein GspE Machinery gene
  GJD94_RS19600 (GJD94_19590) hofC 3880380..3881582 (+) 1203 WP_000157266.1 protein transport protein HofC -
  GJD94_RS19605 (GJD94_19595) guaC 3881617..3882660 (-) 1044 WP_001217338.1 GMP reductase -
  GJD94_RS23685 - 3882816..3882860 (-) 45 WP_120795372.1 protein YacM -
  GJD94_RS19610 (GJD94_19600) coaE 3882885..3883505 (+) 621 WP_001269520.1 dephospho-CoA kinase -
  GJD94_RS19615 (GJD94_19605) zapD 3883505..3884248 (+) 744 WP_001194734.1 cell division protein ZapD -
  GJD94_RS19620 (GJD94_19610) yacG 3884258..3884455 (+) 198 WP_000005042.1 DNA gyrase inhibitor YacG -
  GJD94_RS19625 (GJD94_19615) mutT 3884671..3885060 (-) 390 WP_000736007.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 50585.30 Da        Isoelectric Point: 6.7463

>NTDB_id=349401 GJD94_RS19595 WP_021570596.1 3879005..3880390(+) (pilB) [Escherichia coli strain 1916D6]
MNIPQLTALCLRYHGVLLDASEEVVHVAVVDAPSHELLDALHFATTKRIEITCWTRQQMEGHASRTQQTLPVAVQEKHQP
KAELLTRTLQSALEQRASDIHIEPADNAYRIRLRIDGVLHPLPDVSPDAGVALTARLKVLGNLDIAEHRLPQDGQFTVEL
AGNAVSFRIATLPCRGGEKVVLRLLQQVGQALDVNTLGMQPLQLADFAHALQQPQGLVLVTGPTGSGKTVTLYSALQKLN
TADINICSVEDPVEIPIAGLNQTQIHPRAGLTFQGVLRALLRQDPDVIMIGEIRDGETAEIAIKAAQTGHLVLSTLHTNS
TCETLVRLQQMGVARWMLSSALTLVIAQRLVRKLCPHCRRQQGEPIHIPDNVRPSPLPHWQAPGCVHCYHGFYGRTALFE
VLPITPVIRQLISANTDVESLETHARQAGMRTLFENGCLAVEQGLTTFEELIRVLGMPHGE

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=349401 GJD94_RS19595 WP_021570596.1 3879005..3880390(+) (pilB) [Escherichia coli strain 1916D6]
ATGAATATTCCACAGCTCACTGCCCTGTGTCTGCGTTATCATGGAGTCTTGCTGGATGCCAGCGAAGAGGTGGTTCATGT
TGCGGTAGTCGATGCACCTTCGCATGAGCTACTGGACGCATTGCATTTCGCTACCACCAAACGTATTGAGATCACCTGCT
GGACGCGCCAACAAATGGAAGGTCACGCCAGTCGCACACAACAGACATTGCCCGTAGCTGTTCAGGAGAAGCATCAGCCC
AAAGCAGAGTTGCTAACTCGAACGTTACAATCTGCGCTGGAACAACGCGCGTCTGATATTCATATCGAACCAGCGGACAA
TGCCTACCGCATCCGCTTGCGTATCGACGGCGTATTGCATCCTTTACCGGATGTTTCACCGGATGCCGGAGTCGCATTAA
CCGCCAGATTAAAAGTGCTGGGAAACCTGGATATTGCGGAACATCGCCTGCCGCAGGACGGGCAATTCACTGTCGAACTG
GCAGGAAACGCCGTCTCATTTCGTATTGCGACCTTACCATGTCGGGGTGGTGAAAAGGTGGTATTAAGGTTGTTACAGCA
GGTGGGTCAGGCACTGGATGTCAACACGCTTGGAATGCAGCCGTTACAACTGGCGGACTTTGCTCATGCCTTGCAACAAC
CACAGGGACTGGTGCTGGTAACTGGCCCTACCGGCAGCGGCAAAACGGTCACGCTTTATAGTGCCCTGCAAAAGCTGAAT
ACCGCTGACATTAATATTTGTAGCGTCGAAGATCCAGTTGAGATCCCCATAGCCGGACTAAACCAGACGCAAATCCATCC
GCGTGCCGGACTCACCTTTCAGGGCGTTTTGCGTGCGTTATTGCGCCAGGATCCTGACGTCATCATGATCGGAGAGATCC
GCGATGGCGAAACAGCAGAGATCGCTATTAAAGCGGCGCAAACTGGTCACCTGGTGTTGTCTACCCTACACACTAATTCC
ACCTGCGAAACGCTGGTACGTTTACAGCAAATGGGGGTCGCCCGCTGGATGCTATCATCGGCGCTTACGCTGGTAATAGC
CCAGCGTCTGGTACGCAAACTTTGCCCACATTGTCGCCGGCAGCAAGGGGAGCCCATCCACATTCCAGACAATGTAAGGC
CATCGCCGCTGCCCCACTGGCAGGCACCCGGTTGTGTACATTGCTACCACGGTTTTTATGGTCGTACGGCCTTATTTGAA
GTTCTGCCCATAACGCCGGTCATTCGTCAGCTTATTTCCGCTAATACCGACGTTGAATCGCTGGAAACGCACGCACGACA
GGCGGGTATGCGTACGCTTTTTGAAAACGGCTGCCTGGCCGTAGAGCAAGGCTTAACCACCTTTGAAGAGTTAATCCGCG
TACTGGGGATGCCGCATGGCGAGTAA

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(8-68)

Type II/IV secretion system protein (T2SSE)

(88-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Vibrio campbellii strain DS40M4

42.363

100

0.451
  pilB Legionella pneumophila strain ERS1305867

50

83.297

0.416
  pilB Glaesserella parasuis strain SC1401

41.253

100

0.414
  pilB Acinetobacter baylyi ADP1

39.957

100

0.406
  pilB Vibrio cholerae strain A1552

46.717

85.9

0.401
  pilB Vibrio parahaemolyticus RIMD 2210633

46.547

84.816

0.395
  pilB Haemophilus influenzae 86-028NP

45.22

83.948

0.38
  pilB Acinetobacter baumannii D1279779

43.655

85.466

0.373
  pilB Haemophilus influenzae Rd KW20

44.444

83.948

0.373
  pilF Neisseria gonorrhoeae MS11

44.416

83.514

0.371
  pilF Thermus thermophilus HB27

41.294

87.202

0.36

Multiple sequence alignment