Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | GJD94_RS19590 | Genome accession | NZ_CP046003 |
| Coordinates | 3878555..3878995 (+) | Length | 146 a.a. |
| NCBI ID | WP_000360904.1 | Uniprot ID | P36647 |
| Organism | Escherichia coli strain 1916D6 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 3873555..3883995
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GJD94_RS19570 (GJD94_19560) | aroP | 3874553..3875926 (+) | 1374 | WP_000969915.1 | aromatic amino acid transporter AroP | - |
| GJD94_RS19575 (GJD94_19565) | ampE | 3875969..3876823 (-) | 855 | WP_000172005.1 | beta-lactamase regulator AmpE | - |
| GJD94_RS19580 (GJD94_19570) | ampD | 3876820..3877371 (-) | 552 | WP_000923721.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| GJD94_RS19585 (GJD94_19575) | nadC | 3877459..3878352 (+) | 894 | WP_001135174.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| GJD94_RS19590 (GJD94_19580) | pilA | 3878555..3878995 (+) | 441 | WP_000360904.1 | prepilin peptidase-dependent pilin | Machinery gene |
| GJD94_RS19595 (GJD94_19585) | pilB | 3879005..3880390 (+) | 1386 | WP_021570596.1 | type II secretion system protein GspE | Machinery gene |
| GJD94_RS19600 (GJD94_19590) | hofC | 3880380..3881582 (+) | 1203 | WP_000157266.1 | protein transport protein HofC | - |
| GJD94_RS19605 (GJD94_19595) | guaC | 3881617..3882660 (-) | 1044 | WP_001217338.1 | GMP reductase | - |
| GJD94_RS23685 | - | 3882816..3882860 (-) | 45 | WP_120795372.1 | protein YacM | - |
| GJD94_RS19610 (GJD94_19600) | coaE | 3882885..3883505 (+) | 621 | WP_001269520.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 146 a.a. Molecular weight: 15621.75 Da Isoelectric Point: 4.3938
>NTDB_id=349400 GJD94_RS19590 WP_000360904.1 3878555..3878995(+) (pilA) [Escherichia coli strain 1916D6]
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLDTCDGGSNGIPSPTTTR
YVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLDTCDGGSNGIPSPTTTR
YVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN
Nucleotide
Download Length: 441 bp
>NTDB_id=349400 GJD94_RS19590 WP_000360904.1 3878555..3878995(+) (pilA) [Escherichia coli strain 1916D6]
ATGGACAAGCAACGCGGTTTTACACTTATCGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAGATACCTGCGACGGTGGCAGCAATGGCATTCCCTCGCCTACCACCACCCGC
TATGTTTCAGCCATGAGTGTGGCAAAGGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGGCTAAGCGTCGTCAT
GACACCGGGTTGGGATAACGCAAACGGCGTCACCGGCTGGACGCGCAACTGCAATATTCAAAGTGACAGCGCATTGCAGC
AAGCCTGCGAAGATGTCTTCCGCTTTGATGACGCCAACTAA
ATGGACAAGCAACGCGGTTTTACACTTATCGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAGATACCTGCGACGGTGGCAGCAATGGCATTCCCTCGCCTACCACCACCCGC
TATGTTTCAGCCATGAGTGTGGCAAAGGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGGCTAAGCGTCGTCAT
GACACCGGGTTGGGATAACGCAAACGGCGTCACCGGCTGGACGCGCAACTGCAATATTCAAAGTGACAGCGCATTGCAGC
AAGCCTGCGAAGATGTCTTCCGCTTTGATGACGCCAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Haemophilus influenzae 86-028NP |
43.089 |
84.247 |
0.363 |