Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   TERTU_RS13435 Genome accession   NC_012997
Coordinates   3389587..3390801 (+) Length   404 a.a.
NCBI ID   WP_015819548.1    Uniprot ID   C5BP20
Organism   Teredinibacter turnerae T7901     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3384587..3395801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TERTU_RS13410 (TERTU_3029) - 3384640..3385173 (+) 534 WP_015818911.1 retropepsin-like aspartic protease family protein -
  TERTU_RS13415 (TERTU_3030) nadC 3385187..3386029 (+) 843 WP_015819320.1 carboxylating nicotinate-nucleotide diphosphorylase -
  TERTU_RS13420 (TERTU_3031) - 3386081..3386821 (-) 741 WP_143876291.1 hypothetical protein -
  TERTU_RS13425 (TERTU_3033) - 3386957..3387457 (-) 501 WP_015818399.1 pilin -
  TERTU_RS13430 (TERTU_3034) pilB 3387856..3389583 (+) 1728 WP_015818976.1 type IV-A pilus assembly ATPase PilB Machinery gene
  TERTU_RS13435 (TERTU_3035) pilC 3389587..3390801 (+) 1215 WP_015819548.1 type II secretion system F family protein Machinery gene
  TERTU_RS13440 (TERTU_3036) - 3390802..3391686 (+) 885 WP_015817013.1 prepilin peptidase -
  TERTU_RS13445 (TERTU_3037) coaE 3391686..3392294 (+) 609 WP_015819115.1 dephospho-CoA kinase -
  TERTU_RS13450 (TERTU_3039) yacG 3392284..3392484 (+) 201 WP_015820058.1 DNA gyrase inhibitor YacG -
  TERTU_RS13455 (TERTU_3038) - 3392478..3393437 (-) 960 WP_015817365.1 Nudix family hydrolase -
  TERTU_RS13460 (TERTU_3040) argJ 3393418..3394635 (-) 1218 WP_015817188.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -

Sequence

Protein


Download         Length: 404 a.a.        Molecular weight: 43341.95 Da        Isoelectric Point: 9.7066

>NTDB_id=34914 TERTU_RS13435 WP_015819548.1 3389587..3390801(+) (pilC) [Teredinibacter turnerae T7901]
MATASSELFVYKGVDKRGNKVSGEVSSQSSTMAKAQLLKQGIRANTVRKKPKALFGAGKKPIKPMDIALFTRQMATMMKA
GVPLVQSFDIVAGGADNKTLAELILDIKEDVAAGGGFAASLRKRPKYFDDLFCNLVESGEQSGALETMLDRIATYKEKTE
QLKAKIKKAMTYPIAVVVVAVVVTGVLLVKVVPQFAETFSSFGANLPAFTLFVLHLSNLAQDYWLVVLASIIGAVVLFGK
LKQRSKAVRDSLDKLILRVPVVGNIVYQSIIARFARTLSTTFAAGVPLIDALSSVAGATGNSIYESAVLRIREEVSTGTQ
LNVAINSTKVFPPMLVQMTTIGEESGALDEMLDKVASYYEEAVDNLVDSLTSLLEPMIMAVLGVLVGGLMVAMYLPIFQL
GSVV

Nucleotide


Download         Length: 1215 bp        

>NTDB_id=34914 TERTU_RS13435 WP_015819548.1 3389587..3390801(+) (pilC) [Teredinibacter turnerae T7901]
ATGGCAACCGCAAGCTCCGAGCTTTTTGTATATAAAGGAGTCGATAAACGAGGGAATAAGGTCAGTGGCGAGGTCTCAAG
TCAGAGCAGCACTATGGCTAAGGCACAACTACTGAAGCAAGGGATCAGGGCAAACACAGTACGTAAAAAACCGAAAGCAT
TGTTCGGCGCAGGTAAAAAGCCTATCAAGCCTATGGATATAGCGCTTTTTACGCGTCAAATGGCAACAATGATGAAAGCG
GGCGTACCCCTGGTACAAAGCTTTGACATTGTTGCGGGAGGCGCAGACAACAAAACGCTTGCTGAACTGATTTTAGATAT
CAAGGAAGATGTAGCCGCAGGCGGTGGCTTTGCAGCCTCACTAAGAAAAAGACCCAAATATTTTGATGACCTATTTTGCA
ATTTAGTTGAGTCGGGCGAGCAGTCCGGTGCGCTGGAAACTATGCTTGATCGAATTGCCACTTACAAAGAAAAGACCGAG
CAATTAAAAGCCAAAATTAAAAAAGCAATGACCTACCCAATCGCGGTTGTCGTCGTAGCAGTTGTGGTGACCGGCGTACT
ACTGGTAAAGGTCGTCCCGCAATTTGCTGAAACATTCAGTAGTTTCGGAGCAAACTTACCTGCTTTCACACTTTTTGTTC
TGCACCTGTCCAATTTAGCTCAAGACTATTGGTTAGTAGTCTTAGCTTCAATCATTGGTGCCGTTGTACTGTTTGGCAAA
CTCAAACAGAGAAGCAAAGCTGTGAGAGATTCGCTAGATAAACTAATTTTACGCGTGCCAGTGGTGGGCAACATTGTTTA
TCAATCAATCATTGCCAGATTCGCCAGAACACTATCCACAACCTTTGCTGCGGGCGTGCCGCTTATAGATGCTTTGTCCT
CTGTAGCCGGAGCTACTGGAAATTCGATCTATGAATCTGCGGTACTCCGTATTCGAGAAGAGGTATCTACGGGGACGCAA
TTGAATGTGGCAATAAATAGTACAAAGGTTTTTCCACCCATGCTCGTCCAGATGACCACAATAGGAGAGGAGTCTGGAGC
GTTAGACGAAATGCTGGATAAGGTCGCCAGCTACTACGAAGAAGCCGTCGATAACCTTGTAGATAGCTTGACCTCCCTAC
TAGAACCAATGATTATGGCTGTACTTGGCGTTCTGGTCGGTGGATTGATGGTTGCTATGTACCTACCAATTTTCCAATTA
GGATCCGTTGTTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(274-396)

Type II secretion system (T2SS), protein F (T2SSF)

(70-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C5BP20

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

65.664

98.762

0.649
  pilC Acinetobacter baylyi ADP1

61.055

98.515

0.601
  pilC Acinetobacter baumannii D1279779

59.698

98.267

0.587
  pilC Legionella pneumophila strain ERS1305867

55.556

98.02

0.545
  pilG Neisseria meningitidis 44/76-A

43.325

98.267

0.426
  pilG Neisseria gonorrhoeae MS11

43.325

98.267

0.426
  pilC Vibrio cholerae strain A1552

40.657

98.02

0.399
  pilC Vibrio campbellii strain DS40M4

38.67

100

0.389

Multiple sequence alignment