Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   TERTU_RS13430 Genome accession   NC_012997
Coordinates   3387856..3389583 (+) Length   575 a.a.
NCBI ID   WP_015818976.1    Uniprot ID   C5BP19
Organism   Teredinibacter turnerae T7901     
Function   power the assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3382856..3394583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TERTU_RS13410 (TERTU_3029) - 3384640..3385173 (+) 534 WP_015818911.1 retropepsin-like aspartic protease family protein -
  TERTU_RS13415 (TERTU_3030) nadC 3385187..3386029 (+) 843 WP_015819320.1 carboxylating nicotinate-nucleotide diphosphorylase -
  TERTU_RS13420 (TERTU_3031) - 3386081..3386821 (-) 741 WP_143876291.1 hypothetical protein -
  TERTU_RS13425 (TERTU_3033) - 3386957..3387457 (-) 501 WP_015818399.1 pilin -
  TERTU_RS13430 (TERTU_3034) pilB 3387856..3389583 (+) 1728 WP_015818976.1 type IV-A pilus assembly ATPase PilB Machinery gene
  TERTU_RS13435 (TERTU_3035) pilC 3389587..3390801 (+) 1215 WP_015819548.1 type II secretion system F family protein Machinery gene
  TERTU_RS13440 (TERTU_3036) - 3390802..3391686 (+) 885 WP_015817013.1 prepilin peptidase -
  TERTU_RS13445 (TERTU_3037) coaE 3391686..3392294 (+) 609 WP_015819115.1 dephospho-CoA kinase -
  TERTU_RS13450 (TERTU_3039) yacG 3392284..3392484 (+) 201 WP_015820058.1 DNA gyrase inhibitor YacG -
  TERTU_RS13455 (TERTU_3038) - 3392478..3393437 (-) 960 WP_015817365.1 Nudix family hydrolase -

Sequence

Protein


Download         Length: 575 a.a.        Molecular weight: 62702.51 Da        Isoelectric Point: 5.0442

>NTDB_id=34913 TERTU_RS13430 WP_015818976.1 3387856..3389583(+) (pilB) [Teredinibacter turnerae T7901]
MNSSANLSGLARRLVRDSLISEEDAQKAITGAAKDKIPLALYLVKNSSLDSRQIAESAADEFGTPLIDLQCINDTSSVKG
VVDAKLIHKHHALPLYKRGNRLFLALSDPTNLHALDEIKFNTGLNTEALLAEADKLHAAIEAFLHSEEEGIGDALGGLDE
EALDSLDIEAVDEDGGGSQEDASEADEAPIVRFVNKVLLDAIKLGASDIHFEPYEKAYRVRFRADGILKEVARPPVNLAT
RLAARLKVMSQMDISERRVPQDGRIKMKISKTRAIDFRVNSLPTLFGEKIVLRILDPSSAKLGIDALGYEEEQKKMYLDA
LAQPQGMILVTGPTGSGKTVSLYTGLNILNTTERNISTAEDPVEINLEGINQVNMNTKVGLTFAEALRSFLRQDPDIVMV
GEIRDLETAEIGIKAAQTGHLVLSTLHTNSAPETLTRLLNMGVPTFNVATTVSLIIAQRLARRLCSACKKPATDIPEEIL
NEEGFYNIGMEKNEITLFHPVGCDKCNEGYKGRVGIYEVVRITDEISRIIMEGGNSIQIADAARKAGFHDLRTSALRKAA
IGVTSLEEANRVTKD

Nucleotide


Download         Length: 1728 bp        

>NTDB_id=34913 TERTU_RS13430 WP_015818976.1 3387856..3389583(+) (pilB) [Teredinibacter turnerae T7901]
ATGAATAGTTCAGCAAATCTCAGCGGATTGGCACGCCGACTCGTCCGAGACAGCCTCATCTCAGAAGAAGATGCGCAGAA
AGCCATTACCGGCGCAGCTAAAGACAAAATCCCGCTAGCGCTATACTTGGTCAAAAACAGTTCTCTTGATAGTCGGCAAA
TTGCGGAGTCCGCCGCGGACGAATTCGGTACACCACTCATTGATCTTCAGTGTATAAACGATACCTCTTCTGTCAAAGGT
GTAGTAGACGCCAAACTTATTCATAAACACCACGCATTACCCTTGTACAAGCGTGGCAATCGCTTGTTCCTTGCTCTTTC
AGACCCCACCAACCTTCATGCCCTTGACGAAATCAAATTTAACACAGGCCTGAACACCGAAGCGCTCTTGGCGGAAGCAG
ACAAGCTCCATGCTGCAATCGAAGCCTTTCTTCATTCTGAGGAAGAAGGAATCGGGGATGCGCTGGGAGGCCTGGACGAG
GAAGCACTAGACTCGCTTGATATCGAAGCAGTGGACGAGGACGGAGGCGGTAGCCAGGAGGACGCATCCGAGGCTGACGA
GGCTCCGATAGTGCGCTTTGTAAACAAAGTTCTGCTTGACGCCATCAAACTCGGCGCATCAGATATTCATTTTGAGCCCT
ATGAAAAAGCCTACCGCGTGCGCTTTCGCGCAGACGGTATTCTGAAGGAGGTTGCCCGCCCTCCGGTCAACCTGGCCACT
CGCCTGGCTGCACGCCTAAAAGTGATGTCACAAATGGATATTTCCGAGCGCAGGGTCCCTCAGGACGGCCGGATAAAGAT
GAAAATATCCAAAACCCGCGCGATTGATTTCCGGGTAAACAGCTTGCCGACGCTGTTTGGTGAAAAGATCGTTCTACGAA
TTTTGGATCCTTCAAGCGCGAAGCTCGGTATTGACGCCCTGGGTTACGAGGAAGAGCAGAAAAAAATGTACCTCGATGCG
TTGGCGCAACCACAGGGCATGATTCTGGTAACAGGCCCTACTGGCTCGGGCAAAACCGTATCGCTCTATACCGGTCTGAA
TATTCTAAATACCACCGAGCGCAACATATCCACCGCGGAAGATCCTGTAGAAATCAACCTGGAAGGCATCAACCAGGTCA
ATATGAACACTAAAGTCGGGCTTACGTTTGCAGAAGCACTGCGCTCATTCCTTCGGCAGGACCCTGATATCGTGATGGTC
GGGGAGATCCGGGACCTGGAAACCGCCGAAATCGGGATAAAAGCCGCGCAAACAGGTCACTTGGTGCTGTCGACCCTACA
CACCAACAGCGCCCCAGAAACGCTTACCCGACTGCTCAACATGGGCGTACCCACCTTCAACGTCGCCACAACCGTAAGTT
TGATCATTGCGCAACGATTGGCTCGGCGACTCTGCAGCGCCTGTAAAAAGCCAGCGACCGATATTCCTGAAGAAATTCTA
AATGAAGAAGGCTTCTATAATATTGGCATGGAAAAGAACGAAATCACACTTTTTCACCCTGTGGGTTGCGACAAATGCAA
TGAAGGTTATAAAGGTCGTGTGGGAATTTACGAGGTGGTGCGTATCACAGACGAAATCTCGCGAATTATCATGGAAGGCG
GCAATTCTATTCAAATTGCCGACGCGGCCAGGAAGGCAGGCTTTCACGATTTAAGAACCTCCGCCCTGCGAAAGGCGGCA
ATTGGCGTTACCAGCCTAGAAGAAGCAAACCGAGTAACCAAGGATTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(196-463)

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(43-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C5BP19

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Acinetobacter baumannii D1279779

60.9

100

0.612
  pilB Acinetobacter baylyi ADP1

60

100

0.6
  pilB Legionella pneumophila strain ERS1305867

55.497

99.652

0.553
  pilB Vibrio cholerae strain A1552

51.323

98.609

0.506
  pilB Vibrio parahaemolyticus RIMD 2210633

50.348

99.826

0.503
  pilB Vibrio campbellii strain DS40M4

52.354

92.348

0.483
  pilF Neisseria gonorrhoeae MS11

47.986

99.304

0.477
  pilB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

39.147

93.739

0.367

Multiple sequence alignment