Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   EYB51_RS03710 Genome accession   NZ_CP036356
Coordinates   509012..510250 (-) Length   412 a.a.
NCBI ID   WP_131100614.1    Uniprot ID   -
Organism   Bacillus sp. SYJ     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 504012..515250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYB51_RS03685 spoVS 504098..504358 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  EYB51_RS03690 - 504507..505301 (-) 795 WP_001221095.1 TIGR00282 family metallophosphoesterase -
  EYB51_RS03695 rny 505464..507026 (-) 1563 WP_000204911.1 ribonuclease Y -
  EYB51_RS03700 - 507508..507930 (-) 423 Protein_514 DNA recombination/repair protein RecA -
  EYB51_RS03705 recA 508258..508866 (-) 609 Protein_515 recombinase RecA -
  EYB51_RS03710 cinA 509012..510250 (-) 1239 WP_131100614.1 competence/damage-inducible protein CinA Machinery gene
  EYB51_RS03715 pgsA 510271..510849 (-) 579 WP_001052965.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  EYB51_RS03720 - 510913..511824 (-) 912 WP_131100617.1 helix-turn-helix domain-containing protein -
  EYB51_RS03725 - 511846..512631 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  EYB51_RS03730 - 512771..513019 (-) 249 WP_029439572.1 DUF3243 domain-containing protein -
  EYB51_RS03735 - 513095..513808 (-) 714 WP_087966375.1 SDR family oxidoreductase -
  EYB51_RS03740 - 513912..515198 (-) 1287 WP_131100620.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45407.83 Da        Isoelectric Point: 5.6346

>NTDB_id=348136 EYB51_RS03710 WP_131100614.1 509012..510250(-) (cinA) [Bacillus sp. SYJ]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQQAIEVAEERADMLIFTGGLGPTKDDLTKET
IASSLGEELVYDKNALVLISDYFKRTGREFTENNKKQALVLNGATVFANDHGMAPGMGLNKNGKVYILLPGPPKEMKPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLASDGEVTLRLTAKHQNAHEAEKLIQHMED
LILERVGEFFYGYDQEFLHYKAIELLKKKGLTLACAESLTGGLFGNQVTESAGVSSVFKGGVICYHNDVKQHVLHVPEEV
LSTDGAVSKECARYLAENVRGLLKADIGISFTGVAGPDASEHKEPGIVFVGLAMKDEPTVVFPLNLSGSRQQIRERSAKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=348136 EYB51_RS03710 WP_131100614.1 509012..510250(-) (cinA) [Bacillus sp. SYJ]
ATGAATGCTGAAATTATTGCGGTTGGAACGGAATTATTACTTGGACAAATTGCAAATACAAACGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATTGGCATTAATGTGTACTACCATACTGTAGTTGGAGATAATAACAAACGATTACAGCAGGCGATTG
AAGTTGCAGAAGAACGTGCGGATATGCTTATTTTTACAGGTGGATTAGGCCCGACAAAAGATGATTTGACGAAGGAAACA
ATTGCGTCTAGCTTAGGGGAAGAGCTTGTATATGACAAAAATGCATTAGTATTAATAAGCGATTATTTTAAGCGTACAGG
TCGTGAGTTCACTGAAAATAATAAGAAGCAGGCACTCGTTTTGAATGGAGCAACTGTATTTGCAAATGATCACGGTATGG
CACCTGGTATGGGGTTAAATAAGAACGGAAAAGTTTATATCTTATTACCAGGACCACCGAAAGAAATGAAGCCAATGTAT
GTAAGTTATGTAGAGCCTTTTTTACGTAACTTTACAACAGGAGAAAACATTTATTCTCGCGTGCTTCGCTTCTTCGGAAT
TGGGGAATCTCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACGAACCCGACAATCGCCCCGCTTGCGAGTG
ATGGAGAAGTGACATTACGTTTAACTGCGAAGCATCAAAATGCTCATGAAGCGGAGAAACTCATTCAGCATATGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGGTATGACCAAGAGTTTCTGCACTATAAGGCGATAGAGTTATTGAA
GAAAAAAGGATTAACTTTAGCATGTGCAGAAAGTTTAACAGGTGGTCTCTTCGGTAATCAAGTAACAGAAAGTGCTGGTG
TGTCTTCCGTATTTAAAGGCGGTGTCATTTGTTATCATAATGATGTGAAGCAACATGTTTTACATGTACCTGAGGAAGTG
CTGTCTACTGACGGTGCAGTTAGTAAAGAATGTGCTCGCTATCTTGCTGAAAATGTTAGAGGATTATTAAAAGCGGATAT
CGGAATTAGTTTCACTGGGGTAGCAGGACCAGATGCTTCAGAACATAAAGAGCCGGGAATAGTATTTGTTGGATTGGCGA
TGAAAGATGAACCAACTGTAGTCTTTCCTCTAAATTTAAGCGGAAGTCGTCAACAAATTAGGGAACGCTCAGCAAAATAT
GGGTTTTATCATTTGTATAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-408)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.981

100

0.59
  cinA Streptococcus mitis SK321

47.494

100

0.483
  cinA Streptococcus pneumoniae TIGR4

47.255

100

0.481
  cinA Streptococcus pneumoniae Rx1

46.778

100

0.476
  cinA Streptococcus pneumoniae R6

46.778

100

0.476
  cinA Streptococcus pneumoniae D39

46.539

100

0.473
  cinA Streptococcus mitis NCTC 12261

46.539

100

0.473
  cinA Streptococcus mutans UA159

45.813

98.544

0.451
  cinA Streptococcus suis isolate S10

41.27

91.748

0.379

Multiple sequence alignment