Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   EXW56_RS17935 Genome accession   NZ_CP036132
Coordinates   3525603..3526841 (-) Length   412 a.a.
NCBI ID   WP_002199555.1    Uniprot ID   J8B7H9
Organism   Bacillus mycoides strain JAS823     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3520603..3531841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW56_RS17915 (EXW56_18300) spoVS 3520921..3521181 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  EXW56_RS17920 (EXW56_18305) - 3521331..3522125 (-) 795 WP_002014601.1 TIGR00282 family metallophosphoesterase -
  EXW56_RS17925 (EXW56_18310) rny 3522382..3523944 (-) 1563 WP_002111330.1 ribonuclease Y -
  EXW56_RS17930 (EXW56_18315) recA 3524428..3525459 (-) 1032 WP_002014599.1 recombinase RecA Machinery gene
  EXW56_RS17935 (EXW56_18320) cinA 3525603..3526841 (-) 1239 WP_002199555.1 competence/damage-inducible protein A Machinery gene
  EXW56_RS17940 (EXW56_18325) pgsA 3526862..3527440 (-) 579 WP_002199554.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  EXW56_RS17945 (EXW56_18330) - 3527504..3528415 (-) 912 WP_215596829.1 RodZ domain-containing protein -
  EXW56_RS17950 (EXW56_18335) - 3528437..3529222 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  EXW56_RS17955 (EXW56_18340) - 3529362..3529610 (-) 249 WP_000114449.1 DUF3243 domain-containing protein -
  EXW56_RS17960 (EXW56_18345) - 3529686..3530399 (-) 714 WP_002111338.1 SDR family oxidoreductase -
  EXW56_RS17965 (EXW56_18350) - 3530516..3531802 (-) 1287 WP_002111339.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45506.94 Da        Isoelectric Point: 5.5040

>NTDB_id=347031 EXW56_RS17935 WP_002199555.1 3525603..3526841(-) (cinA) [Bacillus mycoides strain JAS823]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQKAIELAEERADMLIFTGGLGPTKDDLTKET
IASSLDEELVYDEKALTSISDYFKRTGREFTENNKKQALVLNGSTVFANDHGMAPGMGLNKNGKVYILLPGPPKEMKPMY
ISYVEPFLCKFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHHDAAEAEKLIQHVED
LILERVGEFFYGYDQDFLHYKAIRLLKEKGLTLACAESLTGGLFGNQVTENAGVSSVFKGGVICYQNDVKQQILHVPEEV
LRTDGAVSKQCARYLAENVKKLLKADIGISFTGVAGPDASEHKEPGTVFVGLAIKEEPAVVFSLNLSGSRQQIRERSTKY
GFYHLFKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=347031 EXW56_RS17935 WP_002199555.1 3525603..3526841(-) (cinA) [Bacillus mycoides strain JAS823]
ATGAATGCTGAAATTATTGCGGTTGGAACGGAATTATTACTTGGACAAATTGCAAATACAAATGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATCGGAATTAACGTGTACTACCATACTGTTGTTGGGGATAATAACAAGCGATTACAGAAGGCAATTG
AATTGGCTGAAGAACGAGCTGATATGCTCATTTTTACAGGTGGATTAGGACCGACAAAAGATGATTTAACGAAAGAAACA
ATAGCGTCTAGTTTAGATGAAGAGCTTGTGTATGATGAAAAGGCATTAACATCGATAAGCGATTATTTTAAGCGTACAGG
CCGTGAATTTACGGAGAATAATAAAAAGCAGGCGCTCGTTTTAAATGGATCGACTGTATTTGCGAATGATCACGGTATGG
CGCCTGGTATGGGGTTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGACCACCAAAAGAAATGAAGCCGATGTAT
ATAAGTTACGTAGAGCCTTTTTTATGTAAGTTTACAACGGGGGAAAATATTTATTCTCGTGTTCTTCGTTTTTTCGGTAT
TGGGGAATCTCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACGAATCCAACCATTGCACCACTTGCAAATG
ATGGAGAAGTGACATTACGTTTAACTGCCAAACATCATGATGCTGCTGAGGCGGAGAAACTGATTCAGCATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGATATGACCAAGATTTCCTTCATTACAAGGCAATAAGGCTATTGAA
GGAAAAAGGGTTAACTTTAGCATGTGCAGAAAGTTTAACAGGTGGTCTTTTTGGAAATCAAGTAACAGAAAATGCTGGTG
TCTCGTCTGTATTTAAAGGCGGTGTCATTTGTTATCAAAATGATGTGAAGCAACAAATTTTACATGTACCTGAAGAAGTG
TTACGAACTGACGGCGCGGTTAGTAAGCAGTGTGCTCGTTATCTTGCTGAAAATGTAAAGAAACTGTTAAAAGCAGATAT
CGGGATTAGTTTCACTGGGGTGGCAGGACCGGATGCTTCAGAGCATAAAGAGCCAGGAACAGTATTTGTTGGATTGGCGA
TTAAAGAGGAACCAGCTGTAGTCTTCTCGCTTAATTTAAGTGGAAGTCGTCAACAAATTAGAGAACGCTCTACAAAATAT
GGATTTTATCATTTATTTAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(259-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J8B7H9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

59.466

100

0.595
  cinA Streptococcus mitis SK321

46.301

100

0.471
  cinA Streptococcus pneumoniae TIGR4

45.823

100

0.466
  cinA Streptococcus mitis NCTC 12261

45.585

100

0.464
  cinA Streptococcus pneumoniae Rx1

45.346

100

0.461
  cinA Streptococcus pneumoniae R6

45.346

100

0.461
  cinA Streptococcus pneumoniae D39

45.107

100

0.459
  cinA Streptococcus mutans UA159

46.305

98.544

0.456
  cinA Streptococcus suis isolate S10

41.379

91.505

0.379

Multiple sequence alignment