Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   EXW25_RS18750 Genome accession   NZ_CP036111
Coordinates   3709796..3711034 (-) Length   412 a.a.
NCBI ID   WP_097953975.1    Uniprot ID   -
Organism   Bacillus toyonensis strain JAS411     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3704796..3716034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW25_RS18730 (EXW25_19095) spoVS 3705220..3705480 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  EXW25_RS18735 (EXW25_19100) - 3705630..3706424 (-) 795 WP_001221099.1 TIGR00282 family metallophosphoesterase -
  EXW25_RS18740 (EXW25_19105) rny 3706572..3708137 (-) 1566 WP_097953974.1 ribonuclease Y -
  EXW25_RS18745 (EXW25_19110) recA 3708620..3709651 (-) 1032 WP_001283854.1 recombinase RecA Machinery gene
  EXW25_RS18750 (EXW25_19115) cinA 3709796..3711034 (-) 1239 WP_097953975.1 competence/damage-inducible protein CinA Machinery gene
  EXW25_RS18755 (EXW25_19120) pgsA 3711055..3711633 (-) 579 WP_001052980.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  EXW25_RS18760 (EXW25_19125) - 3711697..3712626 (-) 930 WP_097953976.1 helix-turn-helix domain-containing protein -
  EXW25_RS18765 (EXW25_19130) - 3712648..3713433 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  EXW25_RS18770 (EXW25_19135) - 3713572..3713820 (-) 249 WP_000114447.1 DUF3243 domain-containing protein -
  EXW25_RS18775 (EXW25_19140) - 3713896..3714609 (-) 714 WP_000759613.1 SDR family oxidoreductase -
  EXW25_RS18780 (EXW25_19145) - 3714710..3715996 (-) 1287 WP_000411962.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45391.68 Da        Isoelectric Point: 5.3271

>NTDB_id=346883 EXW25_RS18750 WP_097953975.1 3709796..3711034(-) (cinA) [Bacillus toyonensis strain JAS411]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQQAIEVAAERADMLIFTGGLGPTKDDLTKET
IASSLGEELVYDENALALISDYFKRTGREFTENNKKQALVLNGATVFANDHGMAPGMGLNKNGKVYILLPGPPKEMRPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNAHEAEKLIQHMED
LILERVGEFFYGYDQEFLHYKAIELLKKKGLTLACAESLTGGLFGNQVTESAGVSSVFKGGVICYHNDVKQHVLHVPEEV
LSTDGAVSKECARYLAENVKELLKADIGISFTGVAGPDASEHKEPGTVFVGLAIKDEPTVVFPLNLSGSRQQIRERSAKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=346883 EXW25_RS18750 WP_097953975.1 3709796..3711034(-) (cinA) [Bacillus toyonensis strain JAS411]
ATGAATGCTGAAATTATTGCGGTTGGAACGGAATTATTACTTGGACAAATTGCAAATACAAACGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATTGGCATTAATGTGTACTACCATACTGTAGTTGGAGATAATAACAAACGATTACAGCAGGCGATTG
AAGTTGCAGCAGAACGTGCGGACATGCTTATTTTTACAGGTGGATTAGGCCCGACAAAAGATGATTTGACGAAGGAAACA
ATTGCGTCTAGCTTAGGGGAAGAGCTTGTATATGACGAAAATGCATTAGCATTAATAAGCGATTATTTTAAGCGTACAGG
TCGTGAGTTCACTGAAAATAATAAAAAGCAGGCACTCGTTTTGAATGGAGCAACTGTATTTGCAAATGATCACGGTATGG
CACCTGGTATGGGTTTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGACCACCGAAAGAAATGAGGCCAATGTAT
GTAAGTTATGTAGAGCCTTTTTTACGTAACTTTACAACAGGAGAAAACATTTATTCTCGCGTGCTTCGCTTCTTCGGAAT
TGGGGAATCTCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACGAACCCGACAATCGCCCCGCTTGCGAATG
ATGGAGAAGTAACATTACGTTTAACTGCGAAGCATCAAAATGCTCATGAAGCGGAGAAACTCATTCAGCATATGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGGTATGACCAAGAGTTTCTGCACTATAAGGCGATAGAGTTATTGAA
GAAAAAAGGATTAACTTTAGCGTGTGCAGAAAGTTTAACAGGTGGTCTCTTCGGTAATCAAGTAACAGAAAGTGCTGGTG
TGTCTTCAGTATTTAAAGGCGGTGTCATTTGTTATCATAATGATGTGAAGCAACATGTTTTACATGTACCTGAGGAAGTG
TTGTCTACTGACGGTGCAGTTAGTAAAGAATGTGCTCGTTATCTTGCTGAAAATGTTAAAGAATTATTAAAAGCGGATAT
CGGAATTAGTTTCACTGGGGTAGCAGGACCAGATGCTTCAGAACATAAAGAGCCGGGAACAGTATTTGTTGGATTGGCGA
TTAAAGATGAACCAACTGTAGTCTTTCCTCTAAATTTAAGCGGAAGTCGTCAACAAATTAGGGAACGCTCAGCAAAATAT
GGGTTTTATCATTTGTATAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Competence-damaged protein (CinA)

(258-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.981

100

0.59
  cinA Streptococcus mitis SK321

47.255

100

0.481
  cinA Streptococcus pneumoniae TIGR4

47.017

100

0.478
  cinA Streptococcus pneumoniae Rx1

46.539

100

0.473
  cinA Streptococcus pneumoniae R6

46.539

100

0.473
  cinA Streptococcus pneumoniae D39

46.301

100

0.471
  cinA Streptococcus mitis NCTC 12261

46.301

100

0.471
  cinA Streptococcus mutans UA159

45.32

98.544

0.447
  cinA Streptococcus suis isolate S10

41.27

91.748

0.379

Multiple sequence alignment