Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   EXW34_RS17970 Genome accession   NZ_CP036102
Coordinates   3576163..3577401 (-) Length   412 a.a.
NCBI ID   WP_002190485.1    Uniprot ID   -
Organism   Bacillus mycoides strain JAS391     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3571163..3582401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW34_RS17950 (EXW34_18320) spoVS 3571559..3571819 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  EXW34_RS17955 (EXW34_18325) - 3571969..3572763 (-) 795 WP_002014601.1 TIGR00282 family metallophosphoesterase -
  EXW34_RS17960 (EXW34_18330) rny 3572943..3574505 (-) 1563 WP_002111330.1 ribonuclease Y -
  EXW34_RS17965 (EXW34_18335) recA 3574989..3576020 (-) 1032 WP_002014599.1 recombinase RecA Machinery gene
  EXW34_RS17970 (EXW34_18340) cinA 3576163..3577401 (-) 1239 WP_002190485.1 competence/damage-inducible protein A Machinery gene
  EXW34_RS17975 (EXW34_18345) pgsA 3577422..3578000 (-) 579 WP_002014596.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  EXW34_RS17980 (EXW34_18350) - 3578064..3578978 (-) 915 WP_197228275.1 helix-turn-helix domain-containing protein -
  EXW34_RS17985 (EXW34_18355) - 3579000..3579785 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  EXW34_RS17990 (EXW34_18360) - 3579925..3580173 (-) 249 WP_000114449.1 DUF3243 domain-containing protein -
  EXW34_RS17995 (EXW34_18365) ymfI 3580250..3580963 (-) 714 WP_002190487.1 elongation factor P 5-aminopentanone reductase -
  EXW34_RS18000 (EXW34_18370) yfmH 3581081..3582367 (-) 1287 WP_002190488.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45579.95 Da        Isoelectric Point: 5.1194

>NTDB_id=346832 EXW34_RS17970 WP_002190485.1 3576163..3577401(-) (cinA) [Bacillus mycoides strain JAS391]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQKAIELAEERADMLIFTGGLGPTKDDLTKET
IASSLDEELVYDEKALTSISDYFKRTGREFTENNKKQALVLNGSTVFANDHGMAPGMGLNKNGKVYILLPGPPKEMKPMY
ISYVEPFLCKFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHHDADEAEKLIQHVED
LILERVGEFFYGYDQDFLHYKAIRLLKEKGLTLACAESLTGGLFGNQVTENAGVSSVFKGGVICYQNDVKQQILHVPEEV
LRTDGAVSKQCARYLAENVKELLKADIGISFTGVAGPDASEHKEPGTVFIGLVIKDEPAVVFSLNLSGSRQQIRERSTKY
GFYHLFKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=346832 EXW34_RS17970 WP_002190485.1 3576163..3577401(-) (cinA) [Bacillus mycoides strain JAS391]
ATGAATGCTGAAATTATTGCGGTTGGAACGGAATTATTACTTGGACAAATTGCAAATACAAATGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATCGGAATTAACGTGTACTACCATACTGTTGTTGGGGATAATAACAAGCGATTACAGAAGGCAATTG
AATTGGCTGAAGAACGAGCTGATATGCTCATTTTCACAGGTGGATTAGGACCGACAAAAGATGATTTAACGAAAGAAACA
ATAGCGTCTAGTTTAGATGAAGAGCTTGTGTATGATGAAAAGGCATTAACATCGATAAGCGATTATTTTAAGCGTACAGG
CCGTGAATTTACGGAGAATAATAAAAAGCAGGCGCTCGTTTTAAATGGATCGACTGTATTTGCGAATGATCACGGTATGG
CGCCTGGTATGGGGTTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGACCACCAAAAGAAATGAAGCCGATGTAT
ATAAGTTACGTAGAGCCTTTTTTATGTAAGTTTACAACGGGGGAAAATATTTATTCTCGTGTTCTTCGTTTTTTTGGTAT
TGGGGAATCTCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACGAACCCAACCATTGCACCACTTGCAAATG
ATGGAGAAGTGACATTACGTTTAACTGCCAAACATCATGATGCTGATGAGGCGGAGAAACTGATTCAGCATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGATATGACCAAGATTTCCTTCATTACAAGGCAATAAGGCTATTGAA
GGAAAAAGGGTTAACTTTAGCGTGTGCAGAAAGTTTAACAGGTGGTCTTTTTGGAAATCAAGTAACAGAAAATGCTGGTG
TTTCGTCTGTATTTAAAGGCGGTGTCATTTGTTATCAAAATGATGTGAAGCAACAAATTTTACATGTACCTGAAGAAGTG
TTACGTACTGATGGCGCGGTTAGTAAACAGTGTGCTCGCTATCTTGCTGAAAATGTAAAGGAACTGTTAAAAGCAGATAT
CGGAATTAGTTTCACTGGGGTGGCAGGACCGGATGCTTCAGAGCATAAAGAACCAGGAACAGTATTTATTGGATTGGTGA
TTAAAGATGAACCAGCTGTAGTCTTCTCGCTTAATTTAAGTGGAAGTCGTCAACAAATTAGAGAACGCTCTACAAAATAT
GGATTTTATCATTTATTTAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Competence-damaged protein (CinA)

(259-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

59.223

100

0.592
  cinA Streptococcus mitis SK321

46.062

100

0.468
  cinA Streptococcus pneumoniae TIGR4

46.062

100

0.468
  cinA Streptococcus pneumoniae Rx1

45.585

100

0.464
  cinA Streptococcus pneumoniae R6

45.585

100

0.464
  cinA Streptococcus mitis NCTC 12261

45.346

100

0.461
  cinA Streptococcus pneumoniae D39

45.346

100

0.461
  cinA Streptococcus mutans UA159

46.552

98.544

0.459
  cinA Streptococcus suis isolate S10

41.223

91.262

0.376

Multiple sequence alignment