Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   EXW46_RS15610 Genome accession   NZ_CP036085
Coordinates   3004707..3005945 (+) Length   412 a.a.
NCBI ID   WP_088034589.1    Uniprot ID   A0A243A608
Organism   Bacillus mycoides strain JAS12/5     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2999707..3010945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW46_RS15580 (EXW46_15870) yfmH 2999744..3001030 (+) 1287 WP_002014592.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  EXW46_RS15585 (EXW46_15875) ymfI 3001148..3001861 (+) 714 WP_002014593.1 elongation factor P 5-aminopentanone reductase -
  EXW46_RS15590 (EXW46_15880) - 3001938..3002186 (+) 249 WP_000114449.1 DUF3243 domain-containing protein -
  EXW46_RS15595 (EXW46_15885) - 3002326..3003111 (+) 786 WP_000574107.1 DUF3388 domain-containing protein -
  EXW46_RS15600 (EXW46_15890) - 3003133..3004044 (+) 912 WP_131246429.1 helix-turn-helix domain-containing protein -
  EXW46_RS15605 (EXW46_15895) pgsA 3004108..3004686 (+) 579 WP_002014596.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  EXW46_RS15610 (EXW46_15900) cinA 3004707..3005945 (+) 1239 WP_088034589.1 competence/damage-inducible protein A Machinery gene
  EXW46_RS15615 (EXW46_15905) recA 3006088..3006696 (+) 609 Protein_3002 recombinase RecA -
  EXW46_RS15620 (EXW46_15910) - 3006794..3007417 (+) 624 WP_088034594.1 topoisomerase I -
  EXW46_RS15625 (EXW46_15915) recA 3007684..3008109 (+) 426 WP_002088046.1 recombinase RecA Machinery gene
  EXW46_RS15630 (EXW46_15920) rny 3008593..3010155 (+) 1563 WP_002111330.1 ribonuclease Y -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45652.01 Da        Isoelectric Point: 5.1194

>NTDB_id=346601 EXW46_RS15610 WP_088034589.1 3004707..3005945(+) (cinA) [Bacillus mycoides strain JAS12/5]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQKAIELAEERADMLIFTGGLGPTKDDLTKET
IASSLDEELVYDEKALTSISDYFKRTGREFTENNKKQALVLNGSTVFANDHGMAPGMGLNTNRKVYILLPGPPKEMKPMY
ISYVEPFLCKFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHHDADEAEKLIQHVED
LILERVGEFFYGYDQDFLHYKAIRLLKEKGLTLACAESLTGGLFGNQVTENAGVSSVFKGGVICYQNDVKQQILHVPEEV
LRTDGAVSKQCARYLAENVKELLKADIGISFTGVAGPDASEHKEPGTVFIGLVIKDEPAVVFSLNLSGSRQQIRERSTKY
GFYHLFKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=346601 EXW46_RS15610 WP_088034589.1 3004707..3005945(+) (cinA) [Bacillus mycoides strain JAS12/5]
ATGAATGCTGAAATTATTGCGGTTGGAACGGAATTATTACTTGGACAAATTGCAAATACAAATGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATCGGAATTAACGTGTACTACCATACTGTTGTTGGGGATAATAACAAGCGATTACAGAAGGCAATTG
AATTGGCTGAAGAACGAGCTGATATGCTCATTTTTACAGGTGGATTAGGACCGACAAAAGATGATTTAACGAAAGAAACA
ATAGCGTCTAGTTTAGATGAAGAGCTTGTGTATGATGAAAAGGCATTAACATCGATAAGCGATTATTTTAAGCGCACAGG
CCGTGAATTTACGGAGAATAATAAAAAGCAGGCGCTCGTTTTAAATGGATCGACTGTATTTGCGAATGATCACGGTATGG
CGCCTGGTATGGGATTAAATACGAACAGAAAAGTTTATATTTTATTACCAGGACCACCAAAAGAAATGAAGCCGATGTAT
ATAAGTTACGTAGAGCCTTTTTTATGTAAGTTTACAACGGGGGAAAATATTTATTCTCGTGTTCTTCGTTTTTTTGGTAT
TGGGGAATCTCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACGAACCCAACCATTGCACCACTTGCAAATG
ATGGAGAAGTGACATTACGTTTAACTGCCAAACATCATGATGCTGATGAGGCGGAGAAACTGATTCAGCATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGATATGACCAAGATTTCCTTCATTACAAGGCAATAAGGCTATTGAA
GGAAAAAGGGTTAACTTTAGCGTGTGCAGAAAGTTTAACAGGTGGTCTTTTTGGAAATCAAGTAACAGAAAATGCTGGTG
TTTCGTCTGTATTTAAAGGCGGTGTCATTTGTTATCAAAATGATGTGAAGCAACAAATTTTACATGTACCTGAAGAAGTG
TTACGTACTGATGGCGCGGTTAGTAAACAGTGTGCTCGCTATCTTGCTGAAAATGTAAAGGAACTGTTAAAAGCAGATAT
CGGAATTAGTTTCACTGGGGTGGCAGGACCGGATGCTTCAGAGCATAAAGAACCAGGAACAGTATTTATTGGATTGGTGA
TTAAAGATGAACCAGCTGTAGTCTTCTCGCTTAATTTAAGTGGAAGTCGTCAACAAATTAGAGAACGCTCTACAAAATAT
GGATTTTATCATTTATTTAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Competence-damaged protein (CinA)

(259-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A243A608

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

59.223

100

0.592
  cinA Streptococcus mitis SK321

45.823

100

0.466
  cinA Streptococcus pneumoniae TIGR4

45.823

100

0.466
  cinA Streptococcus pneumoniae Rx1

45.346

100

0.461
  cinA Streptococcus pneumoniae R6

45.346

100

0.461
  cinA Streptococcus mitis NCTC 12261

45.107

100

0.459
  cinA Streptococcus pneumoniae D39

45.107

100

0.459
  cinA Streptococcus mutans UA159

46.305

98.544

0.456
  cinA Streptococcus suis isolate S10

40.957

91.262

0.374

Multiple sequence alignment