Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   EXW39_RS18755 Genome accession   NZ_CP036064
Coordinates   3750217..3751455 (-) Length   412 a.a.
NCBI ID   WP_215590107.1    Uniprot ID   -
Organism   Bacillus mycoides strain JAS06/3     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3745217..3756455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW39_RS18735 (EXW39_19125) spoVS 3745608..3745868 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  EXW39_RS18740 (EXW39_19130) - 3746018..3746812 (-) 795 WP_002014601.1 TIGR00282 family metallophosphoesterase -
  EXW39_RS18745 (EXW39_19135) rny 3746992..3748557 (-) 1566 WP_002014600.1 ribonuclease Y -
  EXW39_RS18750 (EXW39_19140) recA 3749041..3750072 (-) 1032 WP_002014599.1 recombinase RecA Machinery gene
  EXW39_RS18755 (EXW39_19145) cinA 3750217..3751455 (-) 1239 WP_215590107.1 competence/damage-inducible protein A Machinery gene
  EXW39_RS18760 (EXW39_19150) pgsA 3751476..3752054 (-) 579 WP_002014596.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  EXW39_RS18765 (EXW39_19155) - 3752118..3753029 (-) 912 WP_002142844.1 helix-turn-helix domain-containing protein -
  EXW39_RS18770 (EXW39_19160) - 3753051..3753836 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  EXW39_RS18775 (EXW39_19165) - 3753976..3754224 (-) 249 WP_113769835.1 DUF3243 domain-containing protein -
  EXW39_RS18780 (EXW39_19170) - 3754301..3755014 (-) 714 WP_002014593.1 SDR family oxidoreductase -
  EXW39_RS18785 (EXW39_19175) - 3755132..3756418 (-) 1287 WP_215590108.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45551.93 Da        Isoelectric Point: 5.2192

>NTDB_id=346388 EXW39_RS18755 WP_215590107.1 3750217..3751455(-) (cinA) [Bacillus mycoides strain JAS06/3]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQKAIELAEERADMLIFTGGLGPTKDDLTKET
IASSLDEELVYDEKALTSISDYFKRTGREFTENNKKQALVLNGSTVFANDHGMAPGMGLNTNGKVYILLPGPPKEMKPMY
ISYVEPFLCKFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHHDADEAEKLIQHVED
LILERVGEFFYGYDQDFLHYKAIRLLKEKGLTLACAESLTGGLFGNQVTENAGVSSVFKGGVICYQNDVKQQILHVPEEV
LRTDGAVSKQCARYLAENVKKLLKADIGISFTGVAGPDASEHKEPGTVFIGLVIKDEPAVVFSLNLSGSRQQIRERSTKY
GFYHLFKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=346388 EXW39_RS18755 WP_215590107.1 3750217..3751455(-) (cinA) [Bacillus mycoides strain JAS06/3]
ATGAATGCTGAAATTATTGCGGTTGGAACGGAATTATTACTTGGACAAATTGCAAATACAAATGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATCGGAATTAACGTGTACTACCATACTGTTGTTGGGGATAATAACAAGCGATTACAGAAGGCAATTG
AATTGGCTGAAGAACGAGCTGATATGCTCATTTTTACAGGTGGATTAGGACCGACAAAAGATGATTTAACGAAAGAAACA
ATAGCGTCTAGTTTAGATGAAGAGCTTGTGTATGATGAAAAGGCATTAACATCGATAAGCGATTATTTTAAGCGTACAGG
CCGTGAATTTACGGAGAATAATAAAAAGCAGGCGCTCGTTTTAAATGGATCGACTGTATTTGCGAATGATCACGGTATGG
CGCCTGGTATGGGATTAAATACGAATGGAAAAGTTTATATTTTATTACCAGGACCACCAAAAGAAATGAAGCCGATGTAT
ATAAGTTACGTAGAGCCTTTTTTATGTAAGTTTACAACGGGGGAAAATATTTATTCTCGTGTTCTTCGTTTTTTTGGTAT
TGGGGAATCTCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACGAACCCAACCATTGCACCACTTGCAAATG
ATGGAGAAGTGACATTACGTTTAACTGCCAAACATCATGATGCTGATGAGGCGGAGAAACTGATTCAGCATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGATATGACCAAGATTTCCTTCATTACAAGGCAATAAGGCTATTGAA
GGAAAAAGGGTTAACTTTAGCGTGTGCAGAAAGTTTAACAGGTGGTCTTTTTGGAAATCAAGTAACAGAAAATGCTGGTG
TTTCGTCTGTATTTAAAGGCGGTGTCATTTGTTATCAAAATGATGTGAAGCAACAAATTTTACATGTACCTGAAGAAGTG
TTACGTACTGATGGCGCGGTTAGTAAACAGTGTGCTCGCTATCTTGCTGAAAATGTAAAGAAACTGTTAAAAGCAGATAT
CGGAATTAGTTTCACTGGGGTGGCAGGACCGGATGCTTCAGAGCATAAAGAACCAGGAACAGTATTTATTGGATTGGTGA
TTAAAGATGAACCAGCTGTAGTCTTCTCGCTTAATTTAAGTGGAAGTCGTCAACAAATTAGAGAACGCTCTACAAAATAT
GGATTTTATCATTTATTTAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Competence-damaged protein (CinA)

(259-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

59.466

100

0.595
  cinA Streptococcus mitis SK321

46.062

100

0.468
  cinA Streptococcus pneumoniae TIGR4

46.062

100

0.468
  cinA Streptococcus pneumoniae Rx1

45.585

100

0.464
  cinA Streptococcus pneumoniae R6

45.585

100

0.464
  cinA Streptococcus mitis NCTC 12261

45.346

100

0.461
  cinA Streptococcus pneumoniae D39

45.346

100

0.461
  cinA Streptococcus mutans UA159

46.552

98.544

0.459
  cinA Streptococcus suis isolate S10

41.223

91.262

0.376

Multiple sequence alignment