Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   EXW51_RS18565 Genome accession   NZ_CP036043
Coordinates   3586718..3587956 (-) Length   412 a.a.
NCBI ID   WP_215573732.1    Uniprot ID   -
Organism   Bacillus mycoides strain BPN58/4     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3581718..3592956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW51_RS18545 (EXW51_18925) spoVS 3582112..3582372 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  EXW51_RS18550 (EXW51_18930) - 3582522..3583316 (-) 795 WP_002014601.1 TIGR00282 family metallophosphoesterase -
  EXW51_RS18555 (EXW51_18935) rny 3583495..3585060 (-) 1566 WP_002014600.1 ribonuclease Y -
  EXW51_RS18560 (EXW51_18940) recA 3585544..3586575 (-) 1032 WP_002014599.1 recombinase RecA Machinery gene
  EXW51_RS18565 (EXW51_18945) cinA 3586718..3587956 (-) 1239 WP_215573732.1 competence/damage-inducible protein A Machinery gene
  EXW51_RS18570 (EXW51_18950) pgsA 3587977..3588555 (-) 579 WP_002014596.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  EXW51_RS18575 (EXW51_18955) - 3588619..3589530 (-) 912 WP_215573733.1 helix-turn-helix domain-containing protein -
  EXW51_RS18580 (EXW51_18960) - 3589552..3590337 (-) 786 WP_002066761.1 DUF3388 domain-containing protein -
  EXW51_RS18585 (EXW51_18965) - 3590477..3590725 (-) 249 WP_000114449.1 DUF3243 domain-containing protein -
  EXW51_RS18590 (EXW51_18970) ymfI 3590802..3591515 (-) 714 WP_002137913.1 elongation factor P 5-aminopentanone reductase -
  EXW51_RS18595 (EXW51_18975) yfmH 3591633..3592919 (-) 1287 WP_002014592.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45550.99 Da        Isoelectric Point: 5.2228

>NTDB_id=346186 EXW51_RS18565 WP_215573732.1 3586718..3587956(-) (cinA) [Bacillus mycoides strain BPN58/4]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQKAIELAEERADMLIFTGGLGPTKDDLTKET
IASSLDEELVYDEKALTSISDYFKRTGREFTENNKKQALVLNGSTVFANNHGMAPGMGLNKNGKVYILLPGPPKEMKPMY
ISYVEPFLCKFTAGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNADEAEKLIQHVED
LILERVGEFFYGYDQDFLHYKAIRLLKEKGLTLACAESLTGGLFGNQVTENAGVSSVFKGGVICYQNDVKQQILHVPEEV
LRIDGAVSKQCARYLAENVKELLKADIGISFTGVAGPDASEHKEPGTVFIGLVIKDEPAVVFSLNLSGSRQQIRERSTKY
GFYHLFKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=346186 EXW51_RS18565 WP_215573732.1 3586718..3587956(-) (cinA) [Bacillus mycoides strain BPN58/4]
ATGAATGCTGAAATTATTGCGGTTGGAACGGAATTATTACTTGGACAAATTGCAAATACAAATGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATCGGAATTAACGTGTACTACCATACTGTTGTTGGGGATAATAACAAGCGATTACAGAAGGCAATTG
AATTGGCTGAAGAACGAGCTGATATGCTCATTTTTACAGGTGGATTAGGACCGACAAAAGATGATTTAACGAAAGAAACA
ATAGCGTCTAGTTTAGATGAAGAGCTTGTGTATGATGAAAAGGCATTAACATCGATAAGCGATTATTTTAAGCGTACAGG
CCGTGAATTTACGGAGAATAATAAAAAGCAGGCGCTCGTTTTAAATGGATCGACTGTATTTGCGAATAATCACGGTATGG
CGCCTGGTATGGGGTTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGACCACCAAAAGAAATGAAGCCGATGTAT
ATAAGTTACGTAGAGCCTTTTTTATGTAAGTTTACAGCGGGGGAAAATATTTATTCTCGTGTTCTTCGTTTTTTTGGTAT
TGGGGAATCTCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACGAATCCAACCATTGCACCACTTGCAAATG
ATGGAGAAGTGACATTACGTTTAACTGCCAAACATCAAAATGCTGATGAGGCGGAGAAACTGATTCAGCATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGATATGACCAAGATTTCCTTCATTACAAGGCAATAAGGCTATTGAA
GGAAAAAGGGTTAACTTTAGCGTGTGCAGAAAGTTTAACAGGTGGTCTTTTTGGAAATCAAGTAACAGAAAATGCTGGTG
TTTCGTCTGTATTTAAAGGCGGTGTCATTTGTTATCAAAATGATGTGAAGCAACAAATTTTACATGTACCTGAAGAAGTG
TTACGTATTGATGGCGCGGTTAGTAAACAGTGTGCTCGTTATCTTGCTGAAAATGTAAAGGAACTGTTAAAAGCAGATAT
CGGAATTAGTTTCACTGGGGTGGCAGGACCGGATGCTTCAGAGCATAAAGAACCAGGAACAGTATTTATTGGATTGGTGA
TTAAAGATGAACCAGCTGTAGTCTTCTCGCTTAATTTAAGTGGAAGTCGTCAACAAATTAGAGAACGCTCTACAAAATAT
GGATTTTATCATTTATTTAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Competence-damaged protein (CinA)

(259-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.981

100

0.59
  cinA Streptococcus mitis SK321

45.823

100

0.466
  cinA Streptococcus pneumoniae TIGR4

45.823

100

0.466
  cinA Streptococcus pneumoniae Rx1

45.346

100

0.461
  cinA Streptococcus pneumoniae R6

45.346

100

0.461
  cinA Streptococcus mitis NCTC 12261

45.107

100

0.459
  cinA Streptococcus pneumoniae D39

45.107

100

0.459
  cinA Streptococcus mutans UA159

46.059

98.544

0.454
  cinA Streptococcus suis isolate S10

41.223

91.262

0.376

Multiple sequence alignment