Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   EXW50_RS18550 Genome accession   NZ_CP036040
Coordinates   3657395..3658633 (-) Length   412 a.a.
NCBI ID   WP_033731186.1    Uniprot ID   -
Organism   Bacillus mycoides strain BPN573     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3652395..3663633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW50_RS18530 (EXW50_18965) spoVS 3652789..3653049 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  EXW50_RS18535 (EXW50_18970) - 3653199..3653993 (-) 795 WP_002014601.1 TIGR00282 family metallophosphoesterase -
  EXW50_RS18540 (EXW50_18975) rny 3654173..3655738 (-) 1566 WP_002014600.1 ribonuclease Y -
  EXW50_RS18545 (EXW50_18980) recA 3656222..3657253 (-) 1032 WP_002014599.1 recombinase RecA Machinery gene
  EXW50_RS18550 (EXW50_18985) cinA 3657395..3658633 (-) 1239 WP_033731186.1 competence/damage-inducible protein A Machinery gene
  EXW50_RS18555 (EXW50_18990) pgsA 3658654..3659232 (-) 579 WP_002014596.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  EXW50_RS18560 (EXW50_18995) - 3659296..3660192 (-) 897 WP_033731187.1 RodZ domain-containing protein -
  EXW50_RS18565 (EXW50_19000) - 3660214..3660999 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  EXW50_RS18570 (EXW50_19005) - 3661139..3661387 (-) 249 WP_000114449.1 DUF3243 domain-containing protein -
  EXW50_RS18575 (EXW50_19010) ymfI 3661464..3662177 (-) 714 WP_215551799.1 elongation factor P 5-aminopentanone reductase -
  EXW50_RS18580 (EXW50_19015) yfmH 3662295..3663581 (-) 1287 WP_002014592.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45578.91 Da        Isoelectric Point: 4.9494

>NTDB_id=346135 EXW50_RS18550 WP_033731186.1 3657395..3658633(-) (cinA) [Bacillus mycoides strain BPN573]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQKAIELAEERADMLIFTGGLGPTKDDLTKET
IASSLDEELVYDEKALTSISDYFKRTGREFTENNKKQALVLNGSTVFANDHGMAPGMGLNTNGKVYILLPGPPKEMKPMY
ISYVEPFLCKFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHYDADEAEKLIQHVED
LILERVGEFFYGYDQDFLHYKAIRLLKEKGLTLACAESLTGGLFGNQVTENAGVSSVFKGGVICYQNDVKQQILHVPEEV
LRTDGAVSKQCARYLAENVKELLKADIGISFTGVAGPDASEHKEPGTVFIGLVIKDEPAVVFSLNLSGSRQQIRERSTKY
GFYHLFKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=346135 EXW50_RS18550 WP_033731186.1 3657395..3658633(-) (cinA) [Bacillus mycoides strain BPN573]
ATGAATGCTGAAATTATTGCGGTTGGAACGGAATTATTACTTGGACAAATTGCAAATACAAATGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATCGGAATTAACGTGTACTACCATACTGTTGTTGGGGATAATAACAAGCGATTACAGAAGGCAATTG
AATTGGCTGAAGAACGAGCTGATATGCTCATTTTCACAGGTGGATTAGGACCGACAAAAGATGATTTAACGAAAGAAACA
ATAGCGTCTAGTTTAGATGAAGAGCTTGTGTATGATGAAAAGGCATTAACATCGATAAGCGATTATTTTAAGCGTACAGG
CCGTGAATTTACGGAGAATAATAAAAAGCAGGCGCTCGTTTTAAATGGATCGACTGTATTTGCGAATGATCACGGTATGG
CGCCTGGTATGGGATTAAATACGAACGGAAAAGTTTATATTTTATTACCAGGACCACCAAAAGAAATGAAGCCGATGTAT
ATAAGTTACGTAGAGCCTTTTTTATGTAAGTTTACAACGGGGGAAAATATTTATTCTCGTGTTCTTCGTTTTTTTGGTAT
TGGGGAATCTCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAGACGAACCCAACCATTGCACCACTTGCAAATG
ATGGAGAAGTGACATTACGTTTAACTGCCAAACATTATGATGCTGATGAGGCGGAGAAACTGATTCAGCATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGATATGACCAAGATTTCCTTCATTACAAGGCAATAAGGCTATTGAA
GGAAAAAGGGTTAACTTTAGCGTGTGCAGAAAGTTTAACAGGTGGTCTTTTTGGAAATCAAGTAACAGAAAATGCTGGTG
TTTCGTCTGTATTTAAAGGCGGTGTCATTTGTTATCAAAATGATGTGAAGCAACAAATTTTACATGTACCTGAAGAAGTG
TTACGTACTGATGGCGCGGTTAGTAAACAGTGTGCTCGCTATCTTGCTGAAAATGTAAAGGAACTGTTAAAAGCAGATAT
CGGAATTAGTTTCACTGGGGTGGCTGGACCGGATGCTTCAGAGCATAAAGAACCAGGAACAGTATTTATTGGATTGGTGA
TTAAAGATGAACCAGCTGTAGTCTTCTCGCTTAATTTAAGTGGAAGTCGTCAACAAATTAGAGAACGCTCTACAAAATAT
GGATTTTATCATTTATTTAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(259-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

59.223

100

0.592
  cinA Streptococcus mitis SK321

46.062

100

0.468
  cinA Streptococcus pneumoniae TIGR4

46.062

100

0.468
  cinA Streptococcus pneumoniae Rx1

45.585

100

0.464
  cinA Streptococcus pneumoniae R6

45.585

100

0.464
  cinA Streptococcus mitis NCTC 12261

45.346

100

0.461
  cinA Streptococcus pneumoniae D39

45.346

100

0.461
  cinA Streptococcus mutans UA159

46.305

98.544

0.456
  cinA Streptococcus suis isolate S10

41.223

91.262

0.376

Multiple sequence alignment