Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   EXW49_RS18085 Genome accession   NZ_CP036023
Coordinates   3589042..3590280 (-) Length   412 a.a.
NCBI ID   WP_016100769.1    Uniprot ID   -
Organism   Bacillus mycoides strain BPN52/2     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3584042..3595280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW49_RS18065 (EXW49_18460) spoVS 3584434..3584694 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  EXW49_RS18070 (EXW49_18465) - 3584844..3585638 (-) 795 WP_002014601.1 TIGR00282 family metallophosphoesterase -
  EXW49_RS18075 (EXW49_18470) rny 3585818..3587383 (-) 1566 WP_002014600.1 ribonuclease Y -
  EXW49_RS18080 (EXW49_18475) recA 3587867..3588898 (-) 1032 WP_002014599.1 recombinase RecA Machinery gene
  EXW49_RS18085 (EXW49_18480) cinA 3589042..3590280 (-) 1239 WP_016100769.1 competence/damage-inducible protein A Machinery gene
  EXW49_RS18090 (EXW49_18485) pgsA 3590301..3590879 (-) 579 WP_002014596.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  EXW49_RS18095 (EXW49_18490) - 3590943..3591839 (-) 897 WP_215589123.1 RodZ domain-containing protein -
  EXW49_RS18100 (EXW49_18495) - 3591861..3592646 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  EXW49_RS18105 (EXW49_18500) - 3592786..3593034 (-) 249 WP_000114449.1 DUF3243 domain-containing protein -
  EXW49_RS18110 (EXW49_18505) - 3593111..3593824 (-) 714 WP_002014593.1 SDR family oxidoreductase -
  EXW49_RS18115 (EXW49_18510) - 3593942..3595228 (-) 1287 WP_002014592.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45598.02 Da        Isoelectric Point: 5.2192

>NTDB_id=345985 EXW49_RS18085 WP_016100769.1 3589042..3590280(-) (cinA) [Bacillus mycoides strain BPN52/2]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQKAIELAEERADMLIFTGGLGPTKDDLTKET
IASSLDEELVYDEKALTSISDYFKRTGREFTENNKKQALVLNGSTVFANDHGMAPGMGLNTNGKVYILLPGPPKEMKPMY
ISYVEPFLCKFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQMNPTIAPLANDGEVTLRLTAKHHDADEAEKLIQHVED
LILERVGEFFYGYDQDYLHYKAIRLLKEKGLTLACAESLTGGLFGNQVTENAGVSSVFKGGVICYQNDVKQQILHVPEEV
LRTDGAVSKQCARYLAENVKKLLKADIGISFTGVAGPDASEHKEPGTVFIGLVIKDEPAVVFSLNLSGSRQQIRERSTKY
GFYHLFKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=345985 EXW49_RS18085 WP_016100769.1 3589042..3590280(-) (cinA) [Bacillus mycoides strain BPN52/2]
ATGAATGCTGAAATTATTGCGGTTGGAACGGAATTATTACTTGGACAAATTGCAAATACAAATGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATCGGAATTAACGTGTACTACCATACTGTTGTTGGGGATAATAACAAGCGATTACAGAAGGCAATTG
AATTGGCTGAAGAACGAGCTGATATGCTCATTTTTACAGGTGGATTAGGACCGACAAAAGATGATTTAACGAAAGAAACA
ATAGCGTCTAGTTTAGATGAAGAGCTTGTGTATGATGAAAAGGCATTAACATCGATAAGCGATTATTTTAAGCGTACAGG
CCGTGAATTTACGGAGAATAATAAAAAGCAGGCGCTCGTTTTAAATGGATCGACTGTATTTGCGAATGATCACGGTATGG
CGCCTGGTATGGGATTAAATACGAATGGAAAAGTTTATATTTTATTACCAGGACCACCAAAAGAAATGAAGCCGATGTAT
ATAAGTTACGTAGAGCCTTTTTTATGTAAGTTTACAACGGGGGAAAATATTTATTCTCGTGTTCTTCGTTTTTTTGGTAT
TGGGGAATCTCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAATGAACCCAACCATTGCACCACTTGCAAATG
ATGGAGAAGTGACATTACGTTTAACTGCCAAACATCATGATGCTGATGAGGCGGAGAAACTGATTCAGCATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGATATGACCAAGATTACCTTCATTACAAGGCAATAAGGCTATTGAA
GGAAAAAGGGTTAACTTTAGCGTGTGCAGAAAGTTTAACAGGTGGTCTTTTTGGAAATCAAGTAACAGAAAATGCTGGTG
TTTCGTCTGTATTTAAAGGCGGTGTCATTTGTTATCAAAATGATGTGAAGCAACAAATTTTACATGTACCTGAAGAAGTG
TTACGTACTGATGGCGCGGTTAGTAAACAGTGTGCTCGCTATCTTGCTGAAAATGTAAAGAAACTGTTAAAAGCAGATAT
CGGAATTAGTTTCACTGGGGTGGCAGGACCGGATGCTTCAGAGCATAAAGAACCAGGAACAGTATTTATTGGATTGGTGA
TTAAAGATGAACCAGCTGTAGTCTTCTCGCTTAATTTAAGTGGAAGTCGTCAACAAATTAGAGAACGCTCTACAAAATAT
GGATTTTATCATTTATTTAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(259-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

59.223

100

0.592
  cinA Streptococcus pneumoniae TIGR4

46.062

100

0.468
  cinA Streptococcus mitis SK321

45.823

100

0.466
  cinA Streptococcus pneumoniae Rx1

45.585

100

0.464
  cinA Streptococcus pneumoniae R6

45.585

100

0.464
  cinA Streptococcus pneumoniae D39

45.346

100

0.461
  cinA Streptococcus mitis NCTC 12261

45.107

100

0.459
  cinA Streptococcus mutans UA159

46.305

98.544

0.456
  cinA Streptococcus suis isolate S10

40.957

91.262

0.374

Multiple sequence alignment