Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   EXW33_RS03835 Genome accession   NZ_CP036014
Coordinates   792929..794167 (-) Length   412 a.a.
NCBI ID   WP_000990727.1    Uniprot ID   -
Organism   Bacillus toyonensis strain BPN45/4     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 787929..799167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW33_RS03815 (EXW33_03960) rny 788714..790279 (-) 1566 WP_000204713.1 ribonuclease Y -
  EXW33_RS03820 (EXW33_03965) - 790764..791186 (-) 423 Protein_778 recombinase RecA -
  EXW33_RS03825 (EXW33_03970) - 791455..792078 (-) 624 WP_000301533.1 hypothetical protein -
  EXW33_RS03830 (EXW33_03975) recA 792176..792784 (-) 609 Protein_780 recombinase RecA -
  EXW33_RS03835 (EXW33_03980) cinA 792929..794167 (-) 1239 WP_000990727.1 competence/damage-inducible protein CinA Machinery gene
  EXW33_RS03840 (EXW33_03985) pgsA 794188..794766 (-) 579 WP_001052980.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  EXW33_RS03845 (EXW33_03990) - 794830..795729 (-) 900 WP_000137456.1 helix-turn-helix domain-containing protein -
  EXW33_RS03850 (EXW33_03995) - 795751..796536 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  EXW33_RS03855 (EXW33_04000) - 796675..796923 (-) 249 WP_000114447.1 DUF3243 domain-containing protein -
  EXW33_RS03860 (EXW33_04005) - 796999..797712 (-) 714 WP_000759599.1 SDR family oxidoreductase -
  EXW33_RS03865 (EXW33_04010) - 797813..799099 (-) 1287 WP_000411966.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45461.86 Da        Isoelectric Point: 5.8115

>NTDB_id=345858 EXW33_RS03835 WP_000990727.1 792929..794167(-) (cinA) [Bacillus toyonensis strain BPN45/4]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQQAIEVAEERADMLIFTGGLGPTKDDLTKET
IASSLGEELVYDKNALALISDYFKRTGREFTENNKKQALVLNGATVFANDHGMAPGMGLNKNGKVYILLPGPPKEMRPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNAHEAEKLIQHMED
LILERVGEFFYGYDQEFLHYKVIELLKKKGLTLACAESLSGGLFGNQVTESAGVSSVFKGGVICYHNDVKQHVLHVPEEV
LSTDGAVSKECARYLAENVKKLLKADIGISFTGVAGPDASEHKEPGTVFVGLAIKDEPTVVFPLNLSGSRQQIRERSAKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=345858 EXW33_RS03835 WP_000990727.1 792929..794167(-) (cinA) [Bacillus toyonensis strain BPN45/4]
ATGAATGCTGAAATTATTGCGGTTGGAACGGAATTATTACTTGGACAAATTGCAAATACAAACGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATTGGCATTAATGTGTACTACCATACTGTAGTTGGAGATAATAACAAACGATTACAGCAGGCGATTG
AAGTTGCAGAAGAACGTGCGGACATGCTTATTTTTACAGGTGGATTAGGCCCGACAAAAGATGATTTGACGAAGGAAACA
ATTGCGTCTAGCTTAGGGGAAGAGCTTGTATATGACAAAAATGCATTAGCATTAATAAGCGATTATTTTAAGCGTACAGG
TCGTGAGTTCACTGAAAATAATAAAAAGCAGGCACTCGTTTTGAATGGAGCAACTGTATTTGCAAATGATCACGGTATGG
CACCTGGTATGGGTTTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGACCACCGAAAGAAATGAGGCCAATGTAT
GTAAGTTATGTAGAGCCTTTTTTACGTAACTTTACAACAGGAGAAAACATTTATTCTCGCGTGCTTCGCTTCTTCGGAAT
TGGGGAATCTCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACGAATCCGACAATCGCCCCGCTTGCGAATG
ATGGAGAAGTGACATTACGTTTAACTGCGAAGCATCAAAATGCTCATGAAGCGGAGAAACTCATTCAGCATATGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGGTATGACCAAGAGTTTCTGCACTATAAGGTGATAGAGTTATTGAA
GAAAAAAGGATTAACTTTAGCGTGTGCAGAAAGTTTATCAGGTGGTCTCTTCGGTAATCAAGTAACAGAAAGTGCTGGTG
TGTCTTCAGTATTTAAAGGCGGTGTCATTTGTTATCATAATGATGTGAAGCAACATGTTTTACATGTACCTGAGGAAGTG
TTGTCTACTGACGGTGCAGTTAGTAAAGAATGTGCTCGTTATCTTGCTGAGAATGTTAAAAAATTATTAAAAGCGGATAT
CGGAATTAGTTTCACTGGGGTAGCAGGACCAGATGCTTCAGAACATAAAGAGCCGGGAACAGTATTTGTTGGATTGGCGA
TTAAAGATGAACCAACTGTAGTCTTTCCTCTAAATTTAAGCGGAAGTCGTCAACAAATTAGGGAACGCTCAGCAAAATAT
GGGTTTTATCATTTGTATAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-408)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

59.223

100

0.592
  cinA Streptococcus mitis SK321

47.255

100

0.481
  cinA Streptococcus pneumoniae TIGR4

47.017

100

0.478
  cinA Streptococcus pneumoniae Rx1

46.539

100

0.473
  cinA Streptococcus pneumoniae R6

46.539

100

0.473
  cinA Streptococcus pneumoniae D39

46.301

100

0.471
  cinA Streptococcus mitis NCTC 12261

46.301

100

0.471
  cinA Streptococcus mutans UA159

45.567

98.544

0.449
  cinA Streptococcus suis isolate S10

40.849

91.505

0.374

Multiple sequence alignment