Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   EXW40_RS18125 Genome accession   NZ_CP036009
Coordinates   3575585..3576823 (-) Length   412 a.a.
NCBI ID   WP_215586773.1    Uniprot ID   -
Organism   Bacillus mycoides strain BPN43/2     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3570585..3581823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW40_RS18105 (EXW40_18480) spoVS 3570977..3571237 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  EXW40_RS18110 (EXW40_18485) - 3571387..3572181 (-) 795 WP_002014601.1 TIGR00282 family metallophosphoesterase -
  EXW40_RS18115 (EXW40_18490) rny 3572361..3573926 (-) 1566 WP_002014600.1 ribonuclease Y -
  EXW40_RS18120 (EXW40_18495) recA 3574410..3575441 (-) 1032 WP_002014599.1 recombinase RecA Machinery gene
  EXW40_RS18125 (EXW40_18500) cinA 3575585..3576823 (-) 1239 WP_215586773.1 competence/damage-inducible protein A Machinery gene
  EXW40_RS18130 (EXW40_18505) pgsA 3576844..3577422 (-) 579 WP_002014596.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  EXW40_RS18135 (EXW40_18510) - 3577486..3578412 (-) 927 WP_215587961.1 helix-turn-helix domain-containing protein -
  EXW40_RS18140 (EXW40_18515) - 3578434..3579219 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  EXW40_RS18145 (EXW40_18520) - 3579359..3579607 (-) 249 WP_000114449.1 DUF3243 domain-containing protein -
  EXW40_RS18150 (EXW40_18525) - 3579684..3580397 (-) 714 WP_002014593.1 SDR family oxidoreductase -
  EXW40_RS18155 (EXW40_18530) - 3580515..3581801 (-) 1287 WP_002014592.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45553.86 Da        Isoelectric Point: 4.9567

>NTDB_id=345834 EXW40_RS18125 WP_215586773.1 3575585..3576823(-) (cinA) [Bacillus mycoides strain BPN43/2]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQKAIELAEERADMLIFTGGLGPTKDDLTKET
IASSLDEELVYDEKALTSISDYFKRTGREFTENNKKQALVLNGSTVFANDHGMAPGMGLNTNGKVYILLPGPPKEMKPMY
ISYVEPFLCKFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHHDADEAEKLIQHVED
LILERVGEFFYGYDQDFLHYKAIRLLKEKGLTLACAESLTGGLFGNQVTENAGVSSVFKGGVICYENDVKQQILHVPEEV
LRTDGAVSKQCARYLAENVKELLKADIGISFTGVAGPDASEHKEPGTVFIGLVIKDEPAVVFSLNLSGSRQQIRERSTKY
GFYHLFKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=345834 EXW40_RS18125 WP_215586773.1 3575585..3576823(-) (cinA) [Bacillus mycoides strain BPN43/2]
ATGAATGCTGAAATTATTGCGGTTGGAACGGAATTATTACTTGGACAAATTGCAAATACAAATGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATCGGAATTAACGTGTACTATCATACTGTTGTTGGGGATAATAACAAGCGATTACAGAAGGCAATTG
AATTGGCTGAAGAACGAGCTGATATGCTCATTTTTACAGGTGGATTAGGACCGACAAAAGATGATTTAACGAAAGAAACA
ATAGCGTCTAGTTTAGATGAAGAGCTTGTGTATGATGAAAAGGCATTAACATCGATAAGCGATTATTTTAAGCGTACAGG
CCGTGAATTTACGGAGAATAATAAAAAGCAGGCGCTCGTTTTAAATGGATCGACTGTATTTGCGAATGATCACGGTATGG
CGCCTGGTATGGGATTAAATACGAATGGAAAAGTTTATATTTTATTACCAGGACCACCAAAAGAAATGAAGCCGATGTAT
ATAAGTTACGTAGAGCCTTTTTTATGTAAGTTTACAACGGGGGAAAATATTTATTCTCGTGTTCTTCGTTTTTTTGGTAT
TGGGGAATCTCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACGAACCCAACCATTGCACCACTTGCAAATG
ATGGAGAAGTGACATTACGTTTAACTGCCAAACATCATGATGCTGATGAGGCGGAGAAACTGATTCAGCATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGATATGACCAAGATTTCCTTCATTACAAGGCAATAAGGCTATTGAA
GGAAAAAGGGTTAACTTTAGCGTGTGCAGAAAGTTTAACAGGTGGTCTTTTTGGAAATCAAGTAACAGAAAATGCTGGTG
TTTCGTCTGTATTTAAAGGCGGTGTCATTTGTTATGAAAATGATGTGAAGCAACAAATTTTACATGTACCTGAAGAAGTG
TTACGTACTGATGGCGCGGTTAGTAAACAGTGTGCTCGCTATCTTGCTGAAAATGTAAAGGAACTGTTAAAAGCAGATAT
CGGAATTAGTTTCACTGGGGTGGCAGGACCGGATGCTTCAGAGCATAAAGAACCAGGAACAGTATTTATTGGATTGGTGA
TTAAAGATGAACCAGCTGTAGTCTTCTCGCTTAATTTAAGTGGAAGTCGTCAACAAATTAGAGAACGCTCTACAAAATAT
GGATTTTATCATTTATTTAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Competence-damaged protein (CinA)

(259-408)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

59.223

100

0.592
  cinA Streptococcus mitis SK321

46.062

100

0.468
  cinA Streptococcus pneumoniae TIGR4

46.062

100

0.468
  cinA Streptococcus pneumoniae Rx1

45.585

100

0.464
  cinA Streptococcus pneumoniae R6

45.585

100

0.464
  cinA Streptococcus mitis NCTC 12261

45.346

100

0.461
  cinA Streptococcus pneumoniae D39

45.346

100

0.461
  cinA Streptococcus mutans UA159

46.552

98.544

0.459
  cinA Streptococcus suis isolate S10

40.957

91.262

0.374

Multiple sequence alignment