Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   EXW30_RS17905 Genome accession   NZ_CP035962
Coordinates   3521697..3522935 (-) Length   412 a.a.
NCBI ID   WP_016105952.1    Uniprot ID   R8Q3X3
Organism   Bacillus mycoides strain BPN07/3     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3516697..3527935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW30_RS17885 (EXW30_18230) spoVS 3516985..3517245 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  EXW30_RS17890 (EXW30_18235) - 3517395..3518189 (-) 795 WP_002014601.1 TIGR00282 family metallophosphoesterase -
  EXW30_RS17895 (EXW30_18240) rny 3518477..3520039 (-) 1563 WP_002160762.1 ribonuclease Y -
  EXW30_RS17900 (EXW30_18245) recA 3520523..3521554 (-) 1032 WP_002014599.1 recombinase RecA Machinery gene
  EXW30_RS17905 (EXW30_18250) cinA 3521697..3522935 (-) 1239 WP_016105952.1 competence/damage-inducible protein A Machinery gene
  EXW30_RS17910 (EXW30_18255) pgsA 3522956..3523534 (-) 579 WP_078180696.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  EXW30_RS17915 (EXW30_18260) - 3523598..3524509 (-) 912 WP_131230714.1 helix-turn-helix domain-containing protein -
  EXW30_RS17920 (EXW30_18265) - 3524531..3525316 (-) 786 WP_002066761.1 DUF3388 domain-containing protein -
  EXW30_RS17925 (EXW30_18270) - 3525456..3525704 (-) 249 WP_000114449.1 DUF3243 domain-containing protein -
  EXW30_RS17930 (EXW30_18275) ymfI 3525780..3526493 (-) 714 WP_002160757.1 elongation factor P 5-aminopentanone reductase -
  EXW30_RS17935 (EXW30_18280) yfmH 3526611..3527897 (-) 1287 WP_002014592.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45594.02 Da        Isoelectric Point: 5.2260

>NTDB_id=345320 EXW30_RS17905 WP_016105952.1 3521697..3522935(-) (cinA) [Bacillus mycoides strain BPN07/3]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQKAIELAEERADMLIFTGGLGPTKDDLTKET
IASNLDEELVYDEKALTSISDYFKRTGREFTENNKKQALVLNGSTVFANDHGMAPGMGLNKNGKVYILLPGPPKEMKPMY
ISYVEPFLCKFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNADEAEKLIQHVED
LILERVGEFFYGYDQDFLHYKAIRLLKEKGLTLACAESLTGGLFGNQVTENAGVSSVFKGGVICYQNDVKQQILHVPEEV
LRTDGAVSKQCARYLAENVKKLLKADIGISFTGVAGPDASEYKEPGTVFIGLAIKDEPAVVFSLNLSGSRQQIRERSTKY
GFYHLFKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=345320 EXW30_RS17905 WP_016105952.1 3521697..3522935(-) (cinA) [Bacillus mycoides strain BPN07/3]
ATGAATGCTGAAATTATTGCGGTTGGAACGGAATTATTACTTGGACAAATTGCAAATACAAATGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATCGGAATTAACGTGTACTACCATACTGTTGTTGGGGATAATAACAAGCGATTACAGAAGGCAATTG
AATTGGCTGAAGAACGAGCTGATATGCTCATTTTTACAGGTGGATTAGGACCGACAAAAGATGATTTAACGAAAGAAACA
ATAGCATCTAATTTAGATGAAGAGCTTGTGTATGATGAAAAGGCATTAACATCGATAAGCGATTATTTTAAGCGTACAGG
CCGTGAATTTACGGAGAATAATAAAAAGCAGGCGCTCGTTTTAAATGGATCGACTGTATTTGCGAATGATCACGGTATGG
CGCCTGGTATGGGGTTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGACCACCAAAAGAAATGAAGCCGATGTAT
ATAAGTTACGTAGAGCCTTTTTTATGTAAGTTTACAACGGGGGAAAATATTTATTCTCGTGTTCTTCGTTTTTTTGGTAT
TGGGGAATCTCAATTAGAAGTGAAAGTTCAAGATTTAATTGATGGTCAAACGAACCCAACCATTGCACCACTCGCAAATG
ATGGAGAAGTGACATTACGTTTAACTGCCAAACATCAAAATGCTGATGAGGCGGAGAAACTGATTCAGCATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGATATGACCAAGATTTCCTTCATTACAAGGCAATAAGGCTATTGAA
GGAAAAAGGGTTAACTTTAGCATGTGCAGAAAGTTTAACAGGTGGTCTTTTTGGAAATCAAGTAACAGAAAATGCTGGCG
TCTCGTCTGTATTTAAAGGCGGTGTCATTTGTTATCAAAATGATGTGAAGCAACAAATTTTACATGTGCCTGAAGAAGTG
TTACGCACTGACGGCGCGGTTAGTAAACAGTGTGCTCGTTATCTTGCTGAAAATGTAAAGAAACTGTTAAAAGCAGATAT
CGGGATTAGTTTCACTGGGGTGGCAGGACCGGATGCTTCAGAGTATAAAGAACCAGGAACCGTATTTATTGGATTGGCGA
TTAAAGATGAACCAGCTGTAGTCTTCTCGCTTAATTTAAGTGGAAGTCGTCAACAAATTAGAGAACGCTCTACAAAATAT
GGATTTTATCATTTATTTAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(259-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R8Q3X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

59.223

100

0.592
  cinA Streptococcus mitis SK321

46.301

100

0.471
  cinA Streptococcus pneumoniae TIGR4

46.301

100

0.471
  cinA Streptococcus pneumoniae Rx1

45.823

100

0.466
  cinA Streptococcus pneumoniae R6

45.823

100

0.466
  cinA Streptococcus mitis NCTC 12261

45.585

100

0.464
  cinA Streptococcus pneumoniae D39

45.585

100

0.464
  cinA Streptococcus mutans UA159

46.305

98.544

0.456
  cinA Streptococcus suis isolate S10

41.379

91.505

0.379

Multiple sequence alignment