Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   GEV49_RS25645 Genome accession   NZ_CP045547
Coordinates   5767799..5768404 (+) Length   201 a.a.
NCBI ID   WP_164251099.1    Uniprot ID   -
Organism   Streptomyces sp. SYP-A7193     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 5762799..5773404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GEV49_RS25615 (GEV49_25850) - 5762869..5763345 (+) 477 WP_153179857.1 HD domain-containing protein -
  GEV49_RS25620 (GEV49_25855) - 5763355..5764521 (-) 1167 WP_153179858.1 acyltransferase family protein -
  GEV49_RS25625 (GEV49_25860) - 5765223..5765417 (+) 195 WP_007449834.1 hypothetical protein -
  GEV49_RS25640 (GEV49_25875) tig 5766032..5767438 (+) 1407 WP_153179859.1 trigger factor -
  GEV49_RS25645 (GEV49_25880) clpP 5767799..5768404 (+) 606 WP_164251099.1 ATP-dependent Clp protease proteolytic subunit Regulator
  GEV49_RS25650 (GEV49_25885) clpP 5768455..5769135 (+) 681 WP_007449830.1 ATP-dependent Clp protease proteolytic subunit Regulator
  GEV49_RS25655 (GEV49_25890) clpX 5769327..5770613 (+) 1287 WP_007449827.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  GEV49_RS25660 (GEV49_25895) - 5770694..5771698 (-) 1005 WP_153179860.1 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21218.06 Da        Isoelectric Point: 4.6747

>NTDB_id=344919 GEV49_RS25645 WP_164251099.1 5767799..5768404(+) (clpP) [Streptomyces sp. SYP-A7193]
MPSAAGEPSIGGGLGDQVYNRLLGERIIFLGQPVDDDIANKITAQLLLLAADPDKDIFLYINSPGGSITAGMAIYDTMQY
IKNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSQHTGQSVE
QITRDSDRDRWFDAFEAKEYGLVDDVITTAAGMPGGGGTGA

Nucleotide


Download         Length: 606 bp        

>NTDB_id=344919 GEV49_RS25645 WP_164251099.1 5767799..5768404(+) (clpP) [Streptomyces sp. SYP-A7193]
ATGCCCTCAGCCGCCGGCGAGCCCTCCATCGGTGGCGGCCTCGGCGACCAGGTCTACAACCGACTGCTCGGCGAGCGGAT
CATCTTCCTCGGCCAGCCGGTCGACGACGACATCGCCAACAAGATCACCGCGCAGCTGCTGCTCCTTGCCGCCGACCCGG
ACAAGGACATCTTCCTGTACATCAACAGCCCGGGCGGTTCGATCACGGCCGGTATGGCGATCTACGACACCATGCAGTAC
ATCAAGAACGACGTGGTGACGATCGCGATGGGTCTCGCGGCCTCCATGGGGCAGTTCCTGCTCAGCGCGGGCACCCCCGG
CAAGCGCTTCGCGCTGCCGAACGCCGAGATCCTCATCCACCAGCCCTCCGCCGGCCTCGCCGGTTCGGCCTCGGACATCA
AGATCCACGCCGAGCGGCTGCTGCACACCAAGAAGCGCATGGCTGAGCTGACCTCTCAGCACACCGGCCAGTCGGTCGAG
CAGATCACCCGCGACTCGGACCGCGACCGCTGGTTCGACGCGTTCGAGGCCAAGGAGTACGGCCTCGTCGACGACGTCAT
CACCACGGCCGCCGGCATGCCGGGCGGCGGTGGCACGGGCGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(16-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

58.14

85.572

0.498
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

53.846

90.547

0.488
  clpP Lactococcus lactis subsp. cremoris KW2

52.717

91.542

0.483
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

52.174

91.542

0.478
  clpP Streptococcus mutans UA159

53.757

86.07

0.463
  clpP Streptococcus thermophilus LMD-9

50.286

87.065

0.438
  clpP Streptococcus thermophilus LMG 18311

50.286

87.065

0.438
  clpP Streptococcus pyogenes JRS4

50.867

86.07

0.438
  clpP Streptococcus pyogenes MGAS315

50.867

86.07

0.438
  clpP Streptococcus pneumoniae Rx1

50.289

86.07

0.433
  clpP Streptococcus pneumoniae D39

50.289

86.07

0.433
  clpP Streptococcus pneumoniae R6

50.289

86.07

0.433
  clpP Streptococcus pneumoniae TIGR4

50.289

86.07

0.433