Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   EPB54_RS17745 Genome accession   NZ_CP035701
Coordinates   3524591..3525703 (+) Length   370 a.a.
NCBI ID   WP_031777464.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 2012AW-0154     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3519591..3530703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPB54_RS17725 rsmB 3520511..3521794 (-) 1284 WP_029838718.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  EPB54_RS17730 fmt 3521875..3522822 (-) 948 WP_029841484.1 methionyl-tRNA formyltransferase -
  EPB54_RS17735 def 3522856..3523374 (-) 519 WP_031777462.1 peptide deformylase -
  EPB54_RS17740 - 3523513..3524607 (+) 1095 WP_031777463.1 LysM peptidoglycan-binding domain-containing protein -
  EPB54_RS17745 dprA 3524591..3525703 (+) 1113 WP_031777464.1 DNA-processing protein DprA Machinery gene
  EPB54_RS17750 - 3525706..3526185 (+) 480 WP_005461440.1 DUF494 family protein -
  EPB54_RS17755 - 3526264..3526833 (+) 570 WP_031777465.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  EPB54_RS17760 - 3526903..3528030 (-) 1128 WP_031777466.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  EPB54_RS17765 purE 3528035..3528520 (-) 486 WP_005394016.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  EPB54_RS17770 - 3528720..3529277 (+) 558 WP_015297509.1 L-threonylcarbamoyladenylate synthase -
  EPB54_RS17775 hemF 3529325..3530242 (+) 918 WP_021454254.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39839.44 Da        Isoelectric Point: 6.4129

>NTDB_id=343981 EPB54_RS17745 WP_031777464.1 3524591..3525703(+) (dprA) [Vibrio parahaemolyticus strain 2012AW-0154]
MKPRNNDSDLAAWLKLSCLPGIGGVKMNKLLAKDTPRNIINSSSDQLYQLGLTNKQLQAWASADKEVDACLTWLATSTNH
HILTLADPLYPPLLKQVVAPPPLLFVEGNPTFLSQPQIAMVGSRNASFDGLHHARQFAAELAQQELIVTSGLALGIDGHA
HDGALQAGGKTIAVLGSGLEHVYPARHRGLAQRVAENGALVSEFRPNAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGS
LITARYALEQGREVFALPASINARNASGGNQLIRNGACLVEKTQDILDEIQSLLDWSVNQSIDLFSTLNDEEELPFPQLL
ANVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=343981 EPB54_RS17745 WP_031777464.1 3524591..3525703(+) (dprA) [Vibrio parahaemolyticus strain 2012AW-0154]
ATGAAACCACGCAATAACGACAGTGACCTTGCTGCCTGGCTTAAGCTGAGTTGCTTGCCAGGCATCGGTGGGGTCAAAAT
GAATAAGCTGCTCGCCAAAGATACGCCTCGCAATATCATCAATTCCTCTTCTGATCAGCTCTATCAATTGGGTTTGACGA
ACAAACAGTTGCAAGCTTGGGCTTCGGCCGATAAAGAGGTCGATGCTTGTTTAACGTGGCTAGCCACTTCTACAAATCAT
CACATTCTGACGCTGGCCGATCCTTTATATCCCCCTTTACTCAAGCAAGTTGTCGCTCCGCCTCCGTTGTTATTTGTCGA
GGGGAATCCTACCTTTTTATCGCAACCACAAATAGCCATGGTGGGCAGCCGTAACGCCAGTTTTGATGGTTTACACCATG
CACGTCAATTTGCGGCAGAGTTGGCTCAGCAAGAATTGATTGTCACTAGCGGCTTAGCGCTTGGGATTGATGGCCATGCT
CATGATGGTGCGCTACAAGCGGGTGGTAAGACGATAGCTGTGCTCGGGTCTGGTTTAGAACATGTTTATCCTGCTCGTCA
TCGTGGCTTAGCGCAGCGAGTAGCAGAGAATGGAGCTCTGGTTTCTGAGTTTCGTCCCAATGCCAAGCCTCGCGCAGAAA
ACTTTCCGCGTCGAAACCGTATTATTAGCGGCTTATCGTTAGGTGTGTTAGTGGTGGAAGCGGCCGAGAAAAGTGGCTCG
CTTATTACCGCGCGTTATGCCCTTGAGCAAGGGCGAGAAGTGTTTGCGCTGCCGGCCTCAATTAATGCTCGCAATGCTAG
TGGTGGTAACCAATTGATTCGCAACGGTGCCTGCCTCGTAGAGAAAACCCAAGATATCCTCGATGAAATACAGTCTTTAC
TCGATTGGTCTGTTAATCAGAGTATCGATTTATTTTCTACGCTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTA
GCTAACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCA
GCTCTTAGAGCTTGAGCTCTCTGGGCATGTTGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-281)

DprA winged helix domain (DprA_WH)

(318-363)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

85.135

100

0.851
  dprA Vibrio cholerae strain A1552

59.189

100

0.592
  dprA Glaesserella parasuis strain SC1401

47.185

100

0.476
  dprA Haemophilus influenzae Rd KW20

46.291

91.081

0.422
  dprA Legionella pneumophila strain ERS1305867

47.239

88.108

0.416
  dprA Neisseria meningitidis strain C311

37.949

100

0.4
  dprA Neisseria meningitidis MC58

37.949

100

0.4
  dprA Neisseria gonorrhoeae MS11

36.082

100

0.378
  dprA Neisseria gonorrhoeae strain FA1090

35.825

100

0.376

Multiple sequence alignment