Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   EPB61_RS11175 Genome accession   NZ_CP035696
Coordinates   789304..790530 (+) Length   408 a.a.
NCBI ID   WP_154180387.1    Uniprot ID   -
Organism   Vibrio furnissii strain 2419-04     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 784304..795530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPB61_RS11150 fldB 784702..785223 (+) 522 WP_004729075.1 flavodoxin FldB -
  EPB61_RS11155 ampD 785245..785796 (-) 552 WP_154180384.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  EPB61_RS11160 nadC 785947..786834 (+) 888 WP_154180385.1 carboxylating nicotinate-nucleotide diphosphorylase -
  EPB61_RS11165 - 787081..787530 (+) 450 WP_055466517.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  EPB61_RS11170 pilB 787537..789225 (+) 1689 WP_154180386.1 type IV-A pilus assembly ATPase PilB Machinery gene
  EPB61_RS11175 pilC 789304..790530 (+) 1227 WP_154180387.1 type II secretion system F family protein Machinery gene
  EPB61_RS11180 pilD 790582..791451 (+) 870 WP_154180388.1 A24 family peptidase Machinery gene
  EPB61_RS11185 coaE 791454..792062 (+) 609 WP_154180389.1 dephospho-CoA kinase -
  EPB61_RS11190 zapD 792095..792835 (+) 741 WP_154180390.1 cell division protein ZapD -
  EPB61_RS11195 yacG 792893..793090 (+) 198 WP_004729092.1 DNA gyrase inhibitor YacG -
  EPB61_RS11200 parC 793172..795445 (-) 2274 WP_004729093.1 DNA topoisomerase IV subunit A -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44810.07 Da        Isoelectric Point: 10.5674

>NTDB_id=343815 EPB61_RS11175 WP_154180387.1 789304..790530(+) (pilC) [Vibrio furnissii strain 2419-04]
MKPNKAAELKNFRWKGINSSGRKVAGHTLAISEIEVRDKLKEQHIQVKKIKKGNISLLTRLTHRVKTRDITLLTRQLSTM
LTTGVPIVQALKLVGDNHRKAEMKSILAQVTKGVEAGTPMSKAMRTASPHFDALYVDLIATGEQSGNLAEVFERLATYRE
KSEQLRAKVIKALIYPAMVMLVALGVSYLMLTMVIPEFESMFKGFGAELPWFTQQILKLSHGVQAYSLWGVLATSAGLLA
LKTARNKSLVFRLKTSRLGLRFPVVGAVLAKAAIAKFSRTLATSFSAGIPILASLKTTAKTAGNVHFETAIQEVHRHTAA
GMPMYIAMRNTDAFPEMVLQMVMIGEESGKLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGVVVGGLVVAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=343815 EPB61_RS11175 WP_154180387.1 789304..790530(+) (pilC) [Vibrio furnissii strain 2419-04]
ATGAAACCAAATAAAGCTGCCGAATTGAAAAACTTCCGCTGGAAAGGCATCAACAGCTCCGGACGAAAAGTTGCCGGACA
CACCTTGGCCATCAGTGAAATCGAAGTGCGAGACAAGCTCAAAGAGCAGCACATTCAGGTGAAGAAGATCAAAAAGGGCA
ACATTTCACTGCTGACTCGCCTCACCCACCGCGTCAAGACTCGCGACATCACCCTGCTCACACGCCAGCTTTCCACCATG
CTGACTACAGGTGTACCCATCGTTCAAGCGTTGAAACTGGTTGGCGACAATCATCGCAAAGCAGAAATGAAATCGATTCT
GGCCCAAGTCACCAAAGGGGTAGAAGCAGGCACCCCGATGTCTAAAGCGATGCGCACTGCCAGCCCACATTTTGATGCGC
TGTACGTTGACCTCATAGCCACCGGCGAGCAATCCGGGAATTTGGCCGAAGTGTTTGAGCGCCTTGCCACCTATCGAGAA
AAAAGCGAACAACTACGCGCCAAAGTGATCAAGGCGCTGATCTATCCGGCGATGGTGATGTTGGTCGCGTTGGGTGTCTC
ATATCTGATGCTGACCATGGTCATTCCCGAGTTTGAAAGCATGTTCAAAGGCTTTGGCGCAGAGCTCCCTTGGTTTACCC
AGCAAATTCTTAAACTCTCCCACGGCGTGCAAGCCTATAGCCTATGGGGTGTACTGGCGACCAGCGCTGGCCTATTGGCG
CTCAAAACCGCGCGCAATAAATCATTGGTCTTTCGATTAAAAACCAGCCGCCTTGGTTTGCGATTTCCTGTTGTCGGCGC
GGTATTAGCCAAGGCTGCCATTGCCAAATTCAGCCGCACATTGGCCACCAGTTTTAGCGCCGGTATACCGATTCTGGCCA
GTTTAAAAACCACCGCCAAAACTGCCGGCAACGTCCATTTTGAAACCGCGATTCAGGAGGTGCATCGCCATACCGCGGCA
GGCATGCCGATGTACATCGCCATGCGCAATACCGACGCATTTCCGGAGATGGTGCTGCAAATGGTGATGATTGGCGAAGA
GTCGGGCAAGCTTGACGACATGCTGAACAAAGTCGCGACCATTTATGAGTTTGAAGTCGACAATACCGTGGACAATCTGG
GTAAAATTCTCGAGCCGCTGATCATCGTCTTTCTGGGAGTGGTCGTTGGCGGGCTGGTGGTTGCGATGTACCTCCCCATC
TTTAACTTAATGAGTGTATTGGGTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

84.314

100

0.843
  pilC Vibrio campbellii strain DS40M4

73.449

98.775

0.725
  pilC Pseudomonas stutzeri DSM 10701

42.469

99.265

0.422
  pilC Acinetobacter baumannii D1279779

41.422

100

0.414
  pilC Legionella pneumophila strain ERS1305867

41.855

97.794

0.409
  pilC Acinetobacter baylyi ADP1

40.441

100

0.404
  pilG Neisseria gonorrhoeae MS11

39.206

98.775

0.387
  pilG Neisseria meningitidis 44/76-A

38.958

98.775

0.385

Multiple sequence alignment