Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   EPB58_RS15715 Genome accession   NZ_CP035693
Coordinates   1223347..1224456 (-) Length   369 a.a.
NCBI ID   WP_038897980.1    Uniprot ID   -
Organism   Vibrio harveyi strain 2011V-1164     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1218347..1229456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPB58_RS15685 hemF 1218876..1219793 (-) 918 WP_154203297.1 oxygen-dependent coproporphyrinogen oxidase -
  EPB58_RS15690 - 1219828..1220385 (-) 558 WP_017190968.1 L-threonylcarbamoyladenylate synthase -
  EPB58_RS15695 purE 1220585..1221070 (+) 486 WP_005440742.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  EPB58_RS15700 - 1221075..1222208 (+) 1134 WP_154203298.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  EPB58_RS15705 - 1222272..1222841 (-) 570 WP_154203299.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  EPB58_RS15710 - 1222865..1223344 (-) 480 WP_154203300.1 DUF494 family protein -
  EPB58_RS15715 dprA 1223347..1224456 (-) 1110 WP_038897980.1 DNA-processing protein DprA Machinery gene
  EPB58_RS15720 - 1224440..1225534 (-) 1095 WP_005450978.1 LysM peptidoglycan-binding domain-containing protein -
  EPB58_RS15725 def 1225673..1226191 (+) 519 WP_005450979.1 peptide deformylase -
  EPB58_RS15730 fmt 1226225..1227172 (+) 948 WP_017190972.1 methionyl-tRNA formyltransferase -
  EPB58_RS15735 rsmB 1227254..1228537 (+) 1284 WP_050934035.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39751.44 Da        Isoelectric Point: 6.0412

>NTDB_id=343775 EPB58_RS15715 WP_038897980.1 1223347..1224456(-) (dprA) [Vibrio harveyi strain 2011V-1164]
MKLRNDTDLAAWLKLSCLPGIGGVKMNKLLSKDTPSNIVGYSTEQLQLLGFTTKQLQAWSEVDKEVDACLTWASASSHHH
IVTLADTLYPPLLKQTVAPPPLLFIKGEASCLSQPQIAMVGSRNASVDGLQHARQFAADLVKHDLIVTSGLALGIDGHAH
DGALQADGKTIAVLGSGLEQVYPARHRGLARRVMENGALVSEFRPDAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGSL
ITARYALEQDREVFAIPASINAPNASGGNQLIRNGACLVQNTQEVLNEIQSLLDWSINQSLDLFSTPIDEEELPFPQLLA
NVGNEATPVDILASRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=343775 EPB58_RS15715 WP_038897980.1 1223347..1224456(-) (dprA) [Vibrio harveyi strain 2011V-1164]
ATGAAACTACGCAATGATACTGACCTCGCCGCCTGGTTAAAGCTGAGCTGCTTGCCAGGCATTGGCGGGGTGAAGATGAA
TAAGCTGCTGAGTAAAGATACGCCAAGCAATATTGTCGGATACTCAACTGAGCAGCTTCAGCTTTTGGGTTTTACCACGA
AGCAACTGCAAGCATGGTCTGAGGTCGATAAAGAAGTCGACGCTTGTCTTACTTGGGCTAGCGCCTCATCTCATCATCAT
ATTGTTACTTTGGCGGATACTCTGTATCCCCCACTTCTCAAACAAACGGTCGCTCCACCTCCTTTACTATTTATAAAGGG
AGAAGCGAGTTGTTTGTCTCAACCTCAAATTGCCATGGTCGGCAGCCGTAATGCTAGTGTTGATGGGCTTCAACACGCAC
GTCAGTTCGCTGCAGATTTGGTGAAACATGATCTGATTGTTACCAGTGGTTTGGCTTTGGGTATCGATGGACACGCTCAT
GATGGTGCTTTGCAAGCGGACGGTAAAACCATTGCGGTATTGGGTTCAGGGTTAGAGCAAGTTTATCCAGCCCGTCACCG
AGGTTTAGCGCGGCGAGTGATGGAAAACGGTGCGTTAGTCTCTGAGTTTCGCCCAGATGCAAAACCTCGAGCAGAAAACT
TCCCACGACGTAATCGAATCATTAGTGGTTTGTCGCTTGGCGTGTTGGTTGTCGAAGCAGCAGAAAAGAGTGGCTCATTA
ATCACCGCTCGCTACGCTCTTGAGCAAGACCGTGAAGTTTTCGCTATACCAGCTTCGATTAATGCTCCCAATGCCAGTGG
TGGTAATCAGTTGATTCGTAATGGGGCTTGTCTCGTACAAAACACTCAAGAGGTGTTGAATGAAATACAGTCTTTGCTCG
ACTGGTCTATTAATCAGAGCTTGGATTTATTTTCTACGCCAATTGATGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAATGAGGCTACACCAGTTGATATTCTTGCAAGCAGGACCAATATACCTGTCCAAGAAGTCATGATGCAGCT
CTTAGAGCTTGAGCTTTCAGGGCATGTTGTTGCAGTATCCGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(78-280)

DprA winged helix domain (DprA_WH)

(314-362)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

92.954

100

0.93
  dprA Vibrio cholerae strain A1552

58.649

100

0.588
  dprA Glaesserella parasuis strain SC1401

46.933

100

0.477
  dprA Haemophilus influenzae Rd KW20

44.706

92.141

0.412
  dprA Legionella pneumophila strain ERS1305867

49.324

80.217

0.396
  dprA Neisseria meningitidis strain C311

36.829

100

0.39
  dprA Neisseria meningitidis MC58

36.829

100

0.39
  dprA Neisseria gonorrhoeae MS11

35.659

100

0.374
  dprA Neisseria gonorrhoeae strain FA1090

35.401

100

0.371

Multiple sequence alignment