Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   SDEG_RS00665 Genome accession   NC_012891
Coordinates   114051..114377 (+) Length   108 a.a.
NCBI ID   WP_003055259.1    Uniprot ID   A0A9X8T184
Organism   Streptococcus dysgalactiae subsp. equisimilis GGS_124     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 109051..119377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDEG_RS00650 (SDEG_0133) - 111695..112060 (+) 366 WP_012766445.1 DUF1033 family protein -
  SDEG_RS00655 (SDEG_0134) comGA/cglA 112141..113082 (+) 942 WP_003062163.1 competence type IV pilus ATPase ComGA Machinery gene
  SDEG_RS00660 (SDEG_0135) comYB 113018..114049 (+) 1032 WP_015057201.1 competence type IV pilus assembly protein ComGB Machinery gene
  SDEG_RS00665 (SDEG_0136) comYC 114051..114377 (+) 327 WP_003055259.1 competence type IV pilus major pilin ComGC Machinery gene
  SDEG_RS00670 (SDEG_0137) comGD 114352..114780 (+) 429 WP_041788719.1 competence type IV pilus minor pilin ComGD -
  SDEG_RS00675 (SDEG_0138) comGE 114788..115033 (+) 246 WP_003058569.1 competence type IV pilus minor pilin ComGE -
  SDEG_RS00680 (SDEG_0139) comGF 115014..115454 (+) 441 WP_003061780.1 competence type IV pilus minor pilin ComGF -
  SDEG_RS00685 (SDEG_0140) comGG 115483..115806 (+) 324 WP_227985720.1 competence type IV pilus minor pilin ComGG -
  SDEG_RS00690 (SDEG_0141) comYH 115869..116822 (+) 954 WP_003060701.1 class I SAM-dependent methyltransferase Machinery gene
  SDEG_RS00695 (SDEG_0142) - 116881..118077 (+) 1197 WP_012766450.1 acetate kinase -
  SDEG_RS00700 (SDEG_0143) - 118384..118590 (+) 207 WP_003058508.1 helix-turn-helix transcriptional regulator -
  SDEG_RS00705 (SDEG_0144) - 118693..119373 (+) 681 WP_012766451.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12384.38 Da        Isoelectric Point: 9.6412

>NTDB_id=34363 SDEG_RS00665 WP_003055259.1 114051..114377(+) (comYC) [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
MKNQWKPLRQYQLQAFTLLEMLLVILVISVLMLLFVPNLSKQKDRVTETGNAAVVKLVENQAELYELSQGSKPSLSQLKT
DGSITDKQVKAYTDYYGKHRDETQKLQP

Nucleotide


Download         Length: 327 bp        

>NTDB_id=34363 SDEG_RS00665 WP_003055259.1 114051..114377(+) (comYC) [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
ATGAAAAACCAATGGAAACCATTACGGCAATACCAACTACAAGCTTTCACACTTCTAGAAATGTTACTGGTAATTTTAGT
CATCAGTGTCTTAATGCTCTTATTTGTACCTAATTTAAGCAAACAAAAAGATAGGGTTACCGAAACAGGAAATGCTGCTG
TTGTCAAATTAGTGGAGAATCAAGCAGAGTTGTACGAATTATCGCAAGGATCAAAACCAAGTTTAAGTCAATTAAAGACT
GATGGCAGTATTACAGATAAGCAGGTAAAAGCTTACACAGACTATTATGGAAAACACAGAGATGAGACTCAAAAACTGCA
ACCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus gordonii str. Challis substr. CH1

60.194

95.37

0.574
  comGC/cglC Streptococcus mitis SK321

53.774

98.148

0.528
  comGC Lactococcus lactis subsp. cremoris KW2

54.369

95.37

0.519
  comGC/cglC Streptococcus mitis NCTC 12261

55.556

91.667

0.509
  comGC/cglC Streptococcus pneumoniae Rx1

51.887

98.148

0.509
  comGC/cglC Streptococcus pneumoniae D39

51.887

98.148

0.509
  comGC/cglC Streptococcus pneumoniae R6

51.887

98.148

0.509
  comGC/cglC Streptococcus pneumoniae TIGR4

51.402

99.074

0.509
  comYC Streptococcus mutans UA140

53.465

93.519

0.5
  comYC Streptococcus mutans UA159

53.465

93.519

0.5
  comYC Streptococcus suis isolate S10

50.562

82.407

0.417

Multiple sequence alignment