Detailed information NTG0342890

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: EUB48_RS05965
• Genome accession: NZ_CP035503
• Coordinates: 1245485..1246585 (-)
• Length: 366 a.a.
• NCBI ID: WP_142818044.1
• Uniprot ID: A0A515D915
• Organism: Rhodoferax sediminis strain CHu59-6-5
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1240485..1251585

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EUB48_RS05940 (EUB48_05940)	-	1241824..1242003 (+)	180	WP_142818040.1	hypothetical protein	-
EUB48_RS05945 (EUB48_05945)	-	1242171..1242992 (+)	822	WP_142818041.1	nitroreductase family protein	-
EUB48_RS05950 (EUB48_05950)	-	1243049..1243284 (-)	236	Protein_1171	winged helix-turn-helix domain-containing protein	-
EUB48_RS05955 (EUB48_05955)	-	1243478..1244752 (-)	1275	WP_142818042.1	Hsp70 family protein	-
EUB48_RS05960 (EUB48_05960)	-	1244752..1245429 (-)	678	WP_142818043.1	alpha/beta hydrolase	-
EUB48_RS05965 (EUB48_05965)	pilA	1245485..1246585 (-)	1101	WP_142818044.1	signal recognition particle-docking protein FtsY	Machinery gene
EUB48_RS05970 (EUB48_05970)	-	1246614..1248047 (+)	1434	WP_142818045.1	M16 family metallopeptidase	-
EUB48_RS05975 (EUB48_05975)	-	1248044..1249390 (+)	1347	WP_142818046.1	M16 family metallopeptidase	-
EUB48_RS05980 (EUB48_05980)	rsmD	1249470..1250045 (+)	576	WP_142818047.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
EUB48_RS05985 (EUB48_05985)	coaD	1250145..1250645 (+)	501	WP_142818048.1	pantetheine-phosphate adenylyltransferase	-
EUB48_RS05990 (EUB48_05990)	-	1250724..1251167 (+)	444	WP_142818049.1	universal stress protein	-

Sequence

Protein

• Length: 366 a.a.
• Molecular weight: 38051.10 Da
• Isoelectric Point: 8.4553

>NTDB_id=342890 EUB48_RS05965 WP_142818044.1 1245485..1246585(-) (pilA) [Rhodoferax sediminis strain CHu59-6-5]
MFSFFKKKPPAPAVAAPMPMPAPASPAAAPSHVVPSPAVPGPAAPGSLIGSALVTPIGIPLPEAVPPERAKWLDKLKAGL
RKTGSSISTVFTGAQIDEALYEDLEAALLMADTGVQATQYLLGEVKRRVKEGGVTHPVAVKNILTEVLTQLLRPLEKPLV
IGEHKPTVIMVAGVNGAGKTTSIGKLTKHLSSAGASVLLAAADTFRAAAREQLGVWADRNTVEIISQDGGDPAAVSFDAV
SAGKARGRDVVLVDTAGRLPTQLHLMQELSKIKRVVQKADATAPHEVLLVIDGNTGQNALTQVKAFDDALQLTGLIVTKL
DGTAKGGVLAAIAQERPVPVYFIGVGEQLGDLETFNAREFAQALLA

Nucleotide

• Length: 1101 bp

>NTDB_id=342890 EUB48_RS05965 WP_142818044.1 1245485..1246585(-) (pilA) [Rhodoferax sediminis strain CHu59-6-5]
ATGTTCAGCTTTTTCAAGAAAAAACCCCCTGCTCCTGCCGTCGCTGCGCCGATGCCTATGCCCGCGCCCGCGAGCCCCGC
TGCAGCGCCCAGTCATGTGGTGCCCAGCCCTGCGGTGCCCGGCCCCGCTGCGCCGGGCTCGCTGATCGGCAGCGCACTGG
TCACGCCGATCGGCATTCCGCTGCCCGAAGCAGTGCCGCCCGAGCGCGCCAAATGGCTCGACAAACTCAAGGCGGGCTTG
CGCAAGACGGGCTCCAGCATCTCCACGGTGTTCACCGGCGCGCAGATCGACGAGGCGCTCTATGAAGACCTGGAGGCCGC
GCTGCTGATGGCTGACACCGGCGTGCAGGCCACGCAGTACCTGCTCGGCGAGGTCAAGCGCCGCGTCAAGGAGGGTGGCG
TGACGCATCCGGTGGCCGTCAAGAACATCCTGACCGAGGTGCTGACCCAGTTGCTCAGACCATTGGAGAAGCCACTGGTG
ATCGGCGAGCACAAGCCCACCGTGATCATGGTCGCCGGCGTGAACGGCGCGGGCAAGACCACCTCGATCGGCAAGCTGAC
CAAGCATCTCTCGAGCGCCGGCGCCTCCGTTCTGCTGGCCGCGGCCGACACCTTCCGCGCCGCCGCGCGCGAGCAACTGG
GCGTGTGGGCCGACCGCAATACGGTGGAGATCATCAGCCAGGACGGCGGCGACCCGGCCGCCGTGAGCTTCGACGCGGTG
AGCGCGGGCAAGGCGCGCGGGCGCGACGTGGTGCTGGTCGACACGGCGGGGCGCCTGCCGACCCAGCTGCATCTGATGCA
GGAGCTGAGCAAGATCAAGCGCGTGGTGCAAAAGGCCGACGCGACCGCGCCGCACGAAGTGCTGCTGGTAATCGACGGCA
ACACCGGCCAGAACGCGCTGACCCAGGTGAAAGCCTTCGACGACGCGCTGCAGCTGACCGGCCTGATCGTCACCAAGCTG
GACGGCACCGCCAAGGGCGGCGTGCTGGCCGCGATCGCGCAGGAGCGGCCCGTGCCCGTGTATTTCATCGGCGTGGGCGA
ACAGCTCGGCGATCTGGAGACCTTCAACGCGCGCGAGTTCGCGCAGGCGCTGCTGGCATGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (166-365)

• SRP54-type protein, helical bundle domain (SRP54_N) (84-147)

3D structure

• AlphaFold DB: A0A515D915

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	61.204	81.694	0.5