Detailed information    

insolico Bioinformatically predicted

Overview


Name   letA   Type   Regulator
Locus tag   F7O57_RS24655 Genome accession   NZ_CP044403
Coordinates   5046503..5047093 (-) Length   196 a.a.
NCBI ID   WP_000633668.1    Uniprot ID   P0AGA7
Organism   Escherichia coli strain NMBU-W10C18     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 5041503..5052093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7O57_RS24640 (F7O57_25145) uhpT 5042025..5043416 (-) 1392 WP_000879194.1 hexose-6-phosphate:phosphate antiporter -
  F7O57_RS24645 (F7O57_25150) uhpC 5043672..5044991 (-) 1320 WP_001301991.1 MFS transporter family glucose-6-phosphate receptor UhpC -
  F7O57_RS24650 (F7O57_25155) uhpB 5045001..5046503 (-) 1503 WP_001521689.1 signal transduction histidine-protein kinase/phosphatase UhpB -
  F7O57_RS24655 (F7O57_25160) letA 5046503..5047093 (-) 591 WP_000633668.1 transcriptional regulator UhpA Regulator
  F7O57_RS24660 (F7O57_25165) - 5047255..5048718 (-) 1464 WP_001521690.1 hypothetical protein -
  F7O57_RS24665 (F7O57_25170) - 5048998..5049480 (-) 483 WP_038428612.1 hypothetical protein -
  F7O57_RS24670 (F7O57_25175) ilvN 5050558..5050848 (-) 291 WP_001181706.1 acetolactate synthase small subunit -

Sequence


Protein


Download         Length: 196 a.a.        Molecular weight: 20889.30 Da        Isoelectric Point: 5.9982

>NTDB_id=342430 F7O57_RS24655 WP_000633668.1 5046503..5047093(-) (letA) [Escherichia coli strain NMBU-W10C18]
MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPKGMATIMLSV
HDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCYLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAA
ELGLSPKTVHVHRANLMEKLGVSNDVELARRMFDGW

Nucleotide


Download         Length: 591 bp        

>NTDB_id=342430 F7O57_RS24655 WP_000633668.1 5046503..5047093(-) (letA) [Escherichia coli strain NMBU-W10C18]
ATGATCACCGTTGCCCTTATAGACGATCACCTCATCGTCCGCTCCGGCTTTGCGCAGTTGCTGGGGCTGGAACCTGATTT
GCAAGTAGTTGCCGAGTTTGGTTCGGGGCGCGAGGCGCTGGCGGGGTTGCCGGGGCGCGGTGTGCAGGTGTGTATTTGCG
ATATCTCCATGCCTGATATCTCCGGTCTGGAGCTGCTAAGCCAGCTGCCGAAAGGTATGGCGACGATTATGCTCTCTGTT
CATGACAGTCCGGCGCTGGTTGAGCAGGCGCTTAACGCGGGGGCGCGCGGCTTTCTCTCCAAACGCTGTAGCCCGGATGA
ACTGATTGCTGCGGTGCATACGGTTGCCACGGGCGGCTGTTATCTGACGCCGGATATTGCCATTAAACTGGCATCCGGTC
GCCAGGACCCGCTAACCAAACGTGAACGCCAGGTGGCGGAAAAACTGGCGCAAGGAATGGCGGTGAAAGAGATTGCCGCC
GAACTGGGCTTGTCACCGAAAACGGTACACGTCCATCGCGCCAATCTGATGGAAAAACTGGGCGTCAGTAACGACGTTGA
ACTGGCGCGCCGCATGTTTGATGGCTGGTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB P0AGA7

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

38.5

100

0.393

  letA Legionella pneumophila strain ERS1305867

38.5

100

0.393

  degU Bacillus subtilis subsp. subtilis str. 168

33.184

100

0.378


Multiple sequence alignment