Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG/cglG   Type   Machinery gene
Locus tag   EQH17_RS09520 Genome accession   NZ_CP035263
Coordinates   1897591..1898004 (-) Length   137 a.a.
NCBI ID   WP_000265617.1    Uniprot ID   A0A064C498
Organism   Streptococcus pneumoniae strain TVO_1901922     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1892591..1903004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH17_RS09495 (EQH17_10055) - 1893294..1894118 (-) 825 WP_000727904.1 membrane protein insertase YidC -
  EQH17_RS09500 (EQH17_10060) rnpA 1894093..1894464 (-) 372 WP_000739246.1 ribonuclease P protein component -
  EQH17_RS09505 (EQH17_10065) - 1894612..1895802 (-) 1191 WP_000167755.1 acetate kinase -
  EQH17_RS09510 (EQH17_10070) comYH 1895853..1896806 (-) 954 WP_000345084.1 class I SAM-dependent methyltransferase Machinery gene
  EQH17_RS09515 (EQH17_10075) - 1896867..1897454 (-) 588 Protein_1872 class I SAM-dependent methyltransferase -
  EQH17_RS09520 (EQH17_10080) comGG/cglG 1897591..1898004 (-) 414 WP_000265617.1 competence type IV pilus minor pilin ComGG Machinery gene
  EQH17_RS09525 (EQH17_10085) comGF/cglF 1897982..1898443 (-) 462 WP_000250529.1 competence type IV pilus minor pilin ComGF Machinery gene
  EQH17_RS09530 (EQH17_10090) comGE/cglE 1898406..1898708 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  EQH17_RS09535 (EQH17_10095) comGD/cglD 1898671..1899075 (-) 405 WP_000588002.1 competence type IV pilus minor pilin ComGD Machinery gene
  EQH17_RS09540 (EQH17_10100) comGC/cglC 1899068..1899334 (-) 267 WP_000962026.1 competence type IV pilus major pilin ComGC Machinery gene
  EQH17_RS09545 (EQH17_10105) - 1899336..1899593 (-) 258 WP_000698511.1 hypothetical protein -
  EQH17_RS09550 (EQH17_10110) lytA 1899825..1900781 (-) 957 WP_061632303.1 N-acetylmuramoyl-L-alanine amidase LytA -
  EQH17_RS09555 (EQH17_10115) - 1900785..1901117 (-) 333 WP_061632304.1 phage holin -
  EQH17_RS09560 (EQH17_10120) - 1901121..1901537 (-) 417 WP_001165341.1 phage holin family protein -
  EQH17_RS09565 (EQH17_10125) - 1901547..1901897 (-) 351 WP_000852244.1 hypothetical protein -
  EQH17_RS09570 (EQH17_10130) - 1901900..1902103 (-) 204 WP_001091119.1 hypothetical protein -
  EQH17_RS11115 (EQH17_10135) - 1902084..1902201 (-) 118 Protein_1884 dihydrodipicolinate reductase -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 15888.33 Da        Isoelectric Point: 10.2476

>NTDB_id=338568 EQH17_RS09520 WP_000265617.1 1897591..1898004(-) (comGG/cglG) [Streptococcus pneumoniae strain TVO_1901922]
MWKKKKVKAGVLLYAVTIAAIFSLLLQFYLNRQIAHYQDYALNKEKLVAFAMAKRTKDKAEQESGEQVFNLGQVSYQNKK
TSLVTTVRTSKSQYEFLFPSVKIKEEKRDKKEEVATDSSEKVEKKKSEEKPEKKENS

Nucleotide


Download         Length: 414 bp        

>NTDB_id=338568 EQH17_RS09520 WP_000265617.1 1897591..1898004(-) (comGG/cglG) [Streptococcus pneumoniae strain TVO_1901922]
GTGTGGAAAAAGAAGAAAGTTAAGGCAGGTGTTCTCCTCTACGCAGTCACCATAGCAGCCATCTTTAGTCTTTTGTTGCA
ATTTTATTTGAACCGACAAATCGCCCACTATCAAGACTATGCTTTAAATAAAGAAAAATTGGTTGCTTTTGCCATGGCTA
AACGAACCAAGGATAAAGCCGAGCAAGAAAGTGGGGAACAGGTCTTTAATCTAGGTCAGGTAAGCTATCAAAACAAGAAA
ACAAGCTTGGTGACGACTGTTCGTACGTCTAAGAGCCAATATGAGTTTCTGTTTCCTTCAGTCAAAATCAAAGAAGAGAA
AAGAGATAAAAAGGAAGAGGTAGCGACCGATTCAAGCGAAAAAGTGGAGAAGAAAAAATCAGAAGAGAAGCCTGAAAAGA
AAGAGAATTCCTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A064C498

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG/cglG Streptococcus pneumoniae TIGR4

94.872

85.401

0.81
  comGG/cglG Streptococcus pneumoniae Rx1

94.872

85.401

0.81
  comGG/cglG Streptococcus pneumoniae D39

94.872

85.401

0.81
  comGG/cglG Streptococcus pneumoniae R6

94.872

85.401

0.81
  comGG/cglG Streptococcus mitis NCTC 12261

89.256

88.321

0.788
  comGG/cglG Streptococcus mitis SK321

85.95

88.321

0.759
  comYG Streptococcus mutans UA140

38.06

97.81

0.372
  comYG Streptococcus mutans UA159

38.06

97.81

0.372

Multiple sequence alignment