Detailed information    

insolico Bioinformatically predicted

Overview


Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   EQH26_RS04630 Genome accession   NZ_CP035254
Coordinates   914382..915032 (+) Length   216 a.a.
NCBI ID   WP_000387359.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901932     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 909382..920032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH26_RS04600 (EQH26_04895) - 909866..910081 (+) 216 WP_001232085.1 YozE family protein -
  EQH26_RS04605 (EQH26_04900) - 910167..911135 (+) 969 WP_000658183.1 PhoH family protein -
  EQH26_RS04610 (EQH26_04910) - 911328..911828 (+) 501 WP_000566988.1 GNAT family N-acetyltransferase -
  EQH26_RS04615 (EQH26_04915) - 911831..912157 (+) 327 Protein_925 TfoX/Sxy family protein -
  EQH26_RS04620 ald 912458..913568 (-) 1111 Protein_926 alanine dehydrogenase -
  EQH26_RS04625 (EQH26_04935) - 913745..914314 (+) 570 WP_000443770.1 GNAT family N-acetyltransferase -
  EQH26_RS04630 (EQH26_04940) comEA/celA/cilE 914382..915032 (+) 651 WP_000387359.1 ComEA family DNA-binding protein Machinery gene
  EQH26_RS04635 (EQH26_04945) comEC/celB 915016..917259 (+) 2244 WP_000942400.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  EQH26_RS04640 (EQH26_04950) - 917438..917626 (+) 189 WP_001812421.1 hypothetical protein -
  EQH26_RS04645 (EQH26_04955) - 917659..918246 (+) 588 WP_000939895.1 ATP-binding cassette domain-containing protein -
  EQH26_RS04650 (EQH26_04960) - 918250..919431 (+) 1182 WP_000655932.1 membrane protein -

Sequence


Protein


Download         Length: 216 a.a.        Molecular weight: 23188.60 Da        Isoelectric Point: 6.9977

>NTDB_id=337905 EQH26_RS04630 WP_000387359.1 914382..915032(+) (comEA/celA/cilE) [Streptococcus pneumoniae strain TVO_1901932]
MEAIIKKIKEYKIIVICTGLGLLVGGFFLLKPAPQTPVKETNLQAEVAAVSKDLVSEKEVNKEEKEEPVEQDLITVDVKG
AVKSPGIYDLPVGSRVNDAVQKAGGLTEQADSKSLNLAQKVSDEALVYVPTKGEEAVSQQTGSGTASSISKEKKVNLNKA
SLEELKQVKGLGGKRAQDIIDHREANGKFKSVDELKKVSGIGGKTIEKLKDYVTVD

Nucleotide


Download         Length: 651 bp        

>NTDB_id=337905 EQH26_RS04630 WP_000387359.1 914382..915032(+) (comEA/celA/cilE) [Streptococcus pneumoniae strain TVO_1901932]
ATGGAAGCAATTATCAAGAAAATCAAAGAGTATAAAATCATCGTCATCTGTACTGGTCTGGGCTTGCTTGTAGGAGGATT
TTTCCTGCTAAAACCAGCTCCACAAACACCTGTCAAAGAGACGAATTTGCAGGCTGAAGTCGCAGCTGTTTCCAAGGATT
TGGTATCCGAAAAGGAAGTGAACAAGGAAGAGAAGGAAGAACCAGTTGAACAAGATCTAATCACAGTAGATGTCAAAGGT
GCTGTCAAATCGCCAGGGATTTATGACTTGCCTGTAGGTAGTCGAGTCAATGATGCTGTTCAGAAGGCTGGTGGCTTGAC
AGAGCAAGCAGACAGCAAGTCGCTCAATCTAGCTCAGAAAGTTAGTGATGAGGCTCTGGTTTACGTTCCTACTAAGGGAG
AAGAAGCAGTTAGTCAACAGACTGGTTCGGGGACAGCTTCTTCAATAAGCAAGGAAAAGAAGGTCAATCTCAACAAGGCC
AGTCTGGAAGAACTCAAGCAGGTCAAGGGACTGGGAGGAAAACGAGCTCAGGACATTATCGACCATCGTGAGGCAAATGG
CAAGTTCAAGTCAGTAGACGAGCTCAAGAAGGTCTCTGGCATTGGTGGCAAAACAATAGAAAAGCTTAAAGACTATGTTA
CAGTGGATTAA

Domains


Predicted by InterproScan.

(76-126)

(151-214)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/celA/cilE Streptococcus pneumoniae Rx1

98.611

100

0.986

  comEA/celA/cilE Streptococcus pneumoniae D39

98.611

100

0.986

  comEA/celA/cilE Streptococcus pneumoniae R6

98.611

100

0.986

  comEA/celA/cilE Streptococcus pneumoniae TIGR4

96.759

100

0.968

  comEA/celA/cilE Streptococcus mitis NCTC 12261

95.37

100

0.954

  comEA/celA/cilE Streptococcus mitis SK321

90.741

100

0.907

  comEA Lactococcus lactis subsp. cremoris KW2

43.612

100

0.458

  comEA Bacillus subtilis subsp. subtilis str. 168

41.579

87.963

0.366

  comEA Latilactobacillus sakei subsp. sakei 23K

33.476

100

0.361


Multiple sequence alignment