Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   SZO_RS09695 Genome accession   NC_012470
Coordinates   2065430..2066701 (-) Length   423 a.a.
NCBI ID   WP_012678689.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 2060430..2071701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SZO_RS09670 (SZO_18600) - 2062320..2062619 (-) 300 WP_012516437.1 DUF1292 domain-containing protein -
  SZO_RS09675 (SZO_18610) ruvX 2062629..2063048 (-) 420 WP_012678687.1 Holliday junction resolvase RuvX -
  SZO_RS09680 (SZO_18620) - 2063045..2063314 (-) 270 WP_012516439.1 IreB family regulatory phosphoprotein -
  SZO_RS09685 (SZO_18630) spx 2063426..2063824 (-) 399 WP_012516440.1 transcriptional regulator Spx -
  SZO_RS09690 (SZO_18640) recA 2064200..2065336 (-) 1137 WP_012678688.1 recombinase RecA Machinery gene
  SZO_RS09695 (SZO_18650) cinA 2065430..2066701 (-) 1272 WP_012678689.1 competence/damage-inducible protein A Machinery gene
  SZO_RS10825 - 2067387..2067575 (-) 189 WP_231840702.1 hypothetical protein -
  SZO_RS09705 (SZO_18670) - 2067671..2068243 (-) 573 WP_012678691.1 phospholipase A2 SlaB -
  SZO_RS09710 (SZO_18680) - 2068540..2069385 (+) 846 WP_012678692.1 helix-turn-helix domain-containing protein -
  SZO_RS09715 (SZO_18690) - 2069832..2070383 (-) 552 WP_012678693.1 DNA-3-methyladenine glycosylase I -
  SZO_RS09720 (SZO_18700) ruvA 2070393..2070989 (-) 597 WP_012678694.1 Holliday junction branch migration protein RuvA -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 45932.61 Da        Isoelectric Point: 5.0653

>NTDB_id=33491 SZO_RS09695 WP_012678689.1 2065430..2066701(-) (cinA) [Streptococcus equi subsp. zooepidemicus]
MKAELIAVGTEILTGQIVNTNAQFLSEKMAELGIDVYFQTAVGDNEERLLSVIDIASQRSDLVILCGGLGPTDDDLTKQT
LAKYLGKALVFDEQAGQKLDAFFAHRKQTARTPNNQRQAQLIEGSVALQNQTGLAVGGLITVDGVTYVVLPGPPSELKPM
VKNELVPLLSASHASLYSRVLRFFGIGESQLVTALEDLIKYQTDPTIAPYAKTGEVTLRLSTKADHQALANERLDQLELQ
LLSIRTIDNQPLRRLLYGYGEDNSLARETFELLKRSGKTITAAESLTAGLFQAQLTDFAGASQVFNGGFITYSIEEKARM
LGIPLVELQRHGVVSSFTAEQMAAQARCLTDSDIGIGLTGVAGPEELEEQPAGTVFIGLATKNKVESLKVVIGGRSRLDV
RYIATLYAFNMVRKALLKSENLL

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=33491 SZO_RS09695 WP_012678689.1 2065430..2066701(-) (cinA) [Streptococcus equi subsp. zooepidemicus]
ATGAAAGCTGAACTCATTGCGGTGGGAACCGAGATTCTGACTGGTCAGATTGTGAATACCAATGCTCAATTTTTATCAGA
AAAAATGGCGGAGCTTGGTATTGATGTTTATTTTCAAACAGCTGTAGGAGATAATGAAGAGCGTTTGCTTTCTGTTATTG
ATATTGCTAGCCAGCGAAGTGATTTAGTGATTTTATGTGGTGGTCTTGGTCCAACAGATGATGATCTAACGAAGCAGACC
TTAGCTAAGTATCTGGGAAAAGCTTTGGTCTTTGATGAGCAGGCAGGTCAAAAATTAGATGCTTTTTTTGCACATCGTAA
GCAGACTGCTAGGACACCAAACAACCAACGTCAGGCGCAGCTGATTGAAGGCTCTGTTGCTTTGCAAAATCAAACAGGAC
TTGCAGTAGGTGGCTTGATCACTGTAGATGGGGTAACCTATGTTGTCTTACCAGGGCCTCCAAGTGAGTTAAAGCCTATG
GTAAAAAATGAGCTGGTACCCCTTCTTTCAGCTAGTCACGCTAGTCTGTACTCAAGAGTGCTGCGCTTTTTTGGCATTGG
TGAGAGTCAACTGGTGACTGCTCTGGAGGATTTGATTAAGTATCAAACAGATCCTACTATTGCTCCTTATGCAAAGACCG
GCGAGGTAACACTGCGACTATCCACAAAGGCTGATCATCAAGCATTAGCTAATGAAAGGCTGGATCAGCTGGAGTTACAG
CTCTTATCCATAAGAACCATAGATAATCAACCCTTACGGCGTTTGCTTTATGGCTATGGGGAGGATAATTCCTTGGCACG
TGAGACCTTTGAGCTATTGAAGCGAAGTGGCAAGACGATAACAGCAGCTGAAAGCTTGACAGCAGGACTGTTTCAAGCCC
AGCTAACTGATTTTGCGGGAGCTTCACAGGTGTTTAACGGTGGCTTTATCACCTACAGCATTGAAGAAAAAGCAAGAATG
CTTGGTATTCCATTGGTTGAGCTCCAAAGGCATGGTGTTGTGAGCTCTTTTACAGCTGAGCAAATGGCTGCGCAGGCACG
TTGCTTGACCGATTCAGATATCGGTATTGGTCTAACAGGTGTTGCTGGTCCAGAGGAACTCGAGGAGCAGCCAGCAGGAA
CAGTTTTCATTGGCCTTGCCACTAAGAATAAGGTAGAATCTCTTAAAGTTGTCATAGGAGGTCGCAGCCGTTTGGACGTG
CGGTACATTGCTACTCTGTACGCTTTTAATATGGTTCGTAAAGCTTTATTAAAATCAGAGAATTTGCTATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(178-240)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(263-416)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mutans UA159

70.686

100

0.707
  cinA Streptococcus mitis NCTC 12261

70.983

98.582

0.7
  cinA Streptococcus mitis SK321

70.983

98.582

0.7
  cinA Streptococcus pneumoniae TIGR4

70.504

98.582

0.695
  cinA Streptococcus pneumoniae Rx1

70.504

98.582

0.695
  cinA Streptococcus pneumoniae R6

70.504

98.582

0.695
  cinA Streptococcus pneumoniae D39

70.264

98.582

0.693
  cinA Streptococcus suis isolate S10

53.938

99.054

0.534
  cinA Bacillus subtilis subsp. subtilis str. 168

47.129

98.818

0.466

Multiple sequence alignment