Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   FXN59_RS03710 Genome accession   NZ_CP043004
Coordinates   684239..684820 (-) Length   193 a.a.
NCBI ID   WP_148327410.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain HK_973     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 679239..689820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FXN59_RS03690 (FXN59_03690) - 681307..682152 (+) 846 WP_148327411.1 DUF817 domain-containing protein -
  FXN59_RS03695 (FXN59_03695) - 682268..682618 (+) 351 WP_005561636.1 type II toxin-antitoxin system RelE/ParE family toxin -
  FXN59_RS03700 (FXN59_03700) - 682611..682934 (+) 324 WP_005542557.1 helix-turn-helix domain-containing protein -
  FXN59_RS03705 (FXN59_03705) clpX 682997..684229 (-) 1233 WP_151294260.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  FXN59_RS03710 (FXN59_03710) clpP 684239..684820 (-) 582 WP_148327410.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  FXN59_RS03715 (FXN59_03715) - 685062..686663 (-) 1602 WP_151294262.1 phosphoethanolamine transferase -
  FXN59_RS03720 (FXN59_03720) gshAB 686895..689168 (+) 2274 WP_151294264.1 bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21375.51 Da        Isoelectric Point: 5.6688

>NTDB_id=334146 FXN59_RS03710 WP_148327410.1 684239..684820(-) (clpP) [Aggregatibacter actinomycetemcomitans strain HK_973]
MSLIPMVVDQTSRGERAYDIYSRLLKDRVIFLSGEVEDNMANLIVAQLLFLESEDPDKDINLYINSPGGSVTAGMAIYDT
MQFIKPDVRTLCIGQACSMGAFLLAGGAAGKRGALPHARVMIHQPLGGFRGQASDIQIHAQEILKIKRTLNERLAFHTGQ
PIETIEKDTDRDNFMSAQEAKNYGLIDEVFSKR

Nucleotide


Download         Length: 582 bp        

>NTDB_id=334146 FXN59_RS03710 WP_148327410.1 684239..684820(-) (clpP) [Aggregatibacter actinomycetemcomitans strain HK_973]
ATGAGTCTAATTCCTATGGTCGTTGACCAAACCTCCCGCGGTGAACGCGCCTATGACATTTATTCCCGCCTGCTAAAAGA
CCGCGTGATTTTTCTCAGCGGCGAAGTGGAAGACAACATGGCAAACCTGATTGTGGCGCAACTGCTTTTCTTAGAATCGG
AAGATCCCGATAAAGACATCAATCTATACATCAATTCCCCGGGTGGTTCCGTCACTGCCGGCATGGCGATTTACGACACC
ATGCAATTTATTAAACCGGATGTTCGCACCCTGTGTATCGGTCAAGCCTGTTCCATGGGCGCATTTTTATTAGCCGGCGG
CGCAGCGGGCAAACGCGGCGCATTGCCGCACGCACGCGTGATGATTCACCAACCACTCGGCGGTTTCCGCGGTCAGGCAT
CGGATATTCAGATTCACGCGCAAGAGATTCTGAAAATTAAACGCACCCTTAACGAACGCCTGGCTTTTCACACCGGTCAA
CCCATTGAAACCATCGAAAAAGACACCGACCGCGACAATTTTATGTCGGCGCAAGAAGCTAAAAATTACGGCTTAATTGA
CGAAGTGTTCAGCAAACGCTAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

68.063

98.964

0.674
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.421

98.446

0.674
  clpP Streptococcus mutans UA159

56.545

98.964

0.56
  clpP Streptococcus pneumoniae R6

56.25

99.482

0.56
  clpP Streptococcus pneumoniae TIGR4

56.25

99.482

0.56
  clpP Streptococcus thermophilus LMD-9

56.25

99.482

0.56
  clpP Streptococcus thermophilus LMG 18311

56.25

99.482

0.56
  clpP Streptococcus pneumoniae Rx1

56.25

99.482

0.56
  clpP Streptococcus pneumoniae D39

56.25

99.482

0.56
  clpP Streptococcus pyogenes JRS4

55.263

98.446

0.544
  clpP Streptococcus pyogenes MGAS315

55.263

98.446

0.544
  clpP Lactococcus lactis subsp. cremoris KW2

54.737

98.446

0.539
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

53.684

98.446

0.528

Multiple sequence alignment