Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   FXN59_RS03705 Genome accession   NZ_CP043004
Coordinates   682997..684229 (-) Length   410 a.a.
NCBI ID   WP_151294260.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain HK_973     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 677997..689229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FXN59_RS03675 (FXN59_03675) cueR 678295..678681 (-) 387 WP_148327413.1 Cu(I)-responsive transcriptional regulator -
  FXN59_RS03680 (FXN59_03680) - 678776..678988 (+) 213 WP_005547502.1 heavy-metal-associated domain-containing protein -
  FXN59_RS03685 (FXN59_03685) - 679075..681234 (+) 2160 WP_151294258.1 cation-translocating P-type ATPase -
  FXN59_RS03690 (FXN59_03690) - 681307..682152 (+) 846 WP_148327411.1 DUF817 domain-containing protein -
  FXN59_RS03695 (FXN59_03695) - 682268..682618 (+) 351 WP_005561636.1 type II toxin-antitoxin system RelE/ParE family toxin -
  FXN59_RS03700 (FXN59_03700) - 682611..682934 (+) 324 WP_005542557.1 helix-turn-helix domain-containing protein -
  FXN59_RS03705 (FXN59_03705) clpX 682997..684229 (-) 1233 WP_151294260.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  FXN59_RS03710 (FXN59_03710) clpP 684239..684820 (-) 582 WP_148327410.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  FXN59_RS03715 (FXN59_03715) - 685062..686663 (-) 1602 WP_151294262.1 phosphoethanolamine transferase -
  FXN59_RS03720 (FXN59_03720) gshAB 686895..689168 (+) 2274 WP_151294264.1 bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45351.97 Da        Isoelectric Point: 4.7614

>NTDB_id=334145 FXN59_RS03705 WP_151294260.1 682997..684229(-) (clpX) [Aggregatibacter actinomycetemcomitans strain HK_973]
MAKDKELRCSFCGKEQDEVNKLIAGTSGYICNECIELCHDMLLNEEHGEEAEATKQQELPTPHQIRAHLDDYVIGQDYAK
KVLAVAVYNHYKRLRTKHQTNDVELGKSNILLIGPTGSGKTLLAETMARMLNVPFAMADATTLTEAGYVGEDVENVLQKL
LQNCDYDIERAEQGIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKLIEGTIASIPPQGGRKHPQQEMLRIDTSKILF
ICGGAFAGLDKVIEKRTSVATAIGFGAEIKSEKDKATLTDLFKQVEPDDLMKYGLIPEFIGRLPVVAPLSELDEEALVRI
LTEPKNALCKQYQALFGLEEVALEFTNEALTAMAKKALARKTGARGLRSIIEGVLLDTMYDLPSLEGLKKVVVNENVIND
NQSPELIYSN

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=334145 FXN59_RS03705 WP_151294260.1 682997..684229(-) (clpX) [Aggregatibacter actinomycetemcomitans strain HK_973]
ATGGCAAAAGATAAAGAATTACGCTGTTCTTTCTGTGGCAAAGAACAAGACGAAGTGAATAAACTTATCGCCGGCACTTC
CGGTTACATTTGTAACGAATGTATCGAATTGTGCCACGATATGCTGCTCAACGAAGAACATGGCGAAGAAGCGGAAGCCA
CAAAGCAACAGGAATTACCGACACCCCACCAAATCCGCGCTCATTTGGACGATTATGTCATCGGTCAGGATTACGCCAAA
AAAGTGTTGGCGGTGGCGGTGTATAACCACTACAAACGCCTGCGCACCAAACATCAGACGAACGATGTGGAACTGGGCAA
AAGTAACATTTTGCTTATCGGCCCGACCGGTAGCGGCAAAACCTTATTGGCGGAAACCATGGCGCGTATGTTAAACGTGC
CTTTCGCCATGGCGGATGCCACCACCTTAACGGAAGCCGGTTATGTGGGCGAAGATGTGGAAAACGTGTTGCAGAAATTG
CTACAAAACTGCGATTACGACATTGAACGCGCAGAACAAGGCATTATCTACATCGACGAAATCGACAAAATCACCCGCAA
ATCGGAAAATCCGTCCATTACCCGTGATGTCTCCGGCGAAGGCGTACAACAAGCCTTATTAAAACTCATCGAAGGCACCA
TCGCCTCCATTCCGCCACAAGGCGGACGCAAACACCCGCAACAGGAAATGTTACGCATCGACACCTCCAAAATCCTGTTT
ATTTGCGGCGGGGCGTTTGCGGGCTTAGATAAAGTCATCGAAAAACGCACCAGCGTCGCCACCGCCATCGGTTTCGGCGC
CGAAATTAAGAGCGAAAAAGACAAAGCGACACTGACCGACTTATTCAAACAAGTAGAACCGGACGATTTAATGAAATACG
GCTTAATCCCGGAATTCATCGGACGCTTGCCGGTGGTGGCCCCCTTAAGCGAATTGGACGAAGAAGCCTTGGTACGCATT
CTCACCGAACCGAAAAACGCCCTGTGCAAGCAATATCAAGCATTGTTTGGCTTGGAAGAGGTGGCATTGGAATTCACCAA
CGAAGCCTTAACCGCGATGGCGAAAAAAGCCCTCGCCCGCAAAACCGGCGCCCGTGGCTTACGTTCCATCATTGAAGGCG
TCTTGCTTGACACCATGTACGACTTACCATCCCTGGAAGGCTTAAAAAAAGTCGTGGTCAACGAAAACGTCATCAACGAC
AACCAATCCCCGGAATTGATTTATTCCAACTAA

Domains

Predicted by InterProScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(7-42)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(312-387)

AAA domain (Cdc48 subfamily) (AAA_2)

(107-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

59.753

98.78

0.59
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

55.172

99.024

0.546

Multiple sequence alignment