Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   EPT58_RS08100 Genome accession   NZ_CP035012
Coordinates   1670662..1671924 (+) Length   420 a.a.
NCBI ID   WP_053267776.1    Uniprot ID   -
Organism   Lactiplantibacillus plantarum strain 12_3     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1665662..1676924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPT58_RS08080 (EPT58_08080) yfmF 1666244..1667509 (+) 1266 WP_128383908.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  EPT58_RS08085 (EPT58_08085) yfmH 1667506..1668807 (+) 1302 WP_003644640.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  EPT58_RS08090 (EPT58_08090) - 1668911..1669783 (+) 873 WP_003641501.1 RodZ domain-containing protein -
  EPT58_RS08095 (EPT58_08095) pgsA 1669806..1670390 (+) 585 WP_003641502.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  EPT58_RS08100 (EPT58_08100) cinA 1670662..1671924 (+) 1263 WP_053267776.1 competence/damage-inducible protein A Machinery gene
  EPT58_RS08105 (EPT58_08105) recA 1672016..1673158 (+) 1143 WP_003641504.1 recombinase RecA Machinery gene
  EPT58_RS08110 (EPT58_08110) rny 1673389..1674948 (+) 1560 WP_003644638.1 ribonuclease Y -
  EPT58_RS08115 (EPT58_08115) - 1675073..1675879 (+) 807 WP_003641506.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 45220.29 Da        Isoelectric Point: 5.2470

>NTDB_id=333961 EPT58_RS08100 WP_053267776.1 1670662..1671924(+) (cinA) [Lactiplantibacillus plantarum strain 12_3]
MQAEIIAVGTEILLGQITNTNSTYIARGLAELGIDSYYQTVVGDNRQRLSTVIEIAAQRNDLVILTGGLGPTKDDLTKQT
LAHYLNVALVEDQAAMQKITAWFATNDKVMTANNRLQALYPAGAQPLTNHNGMAVGAFYQSENSADFLLLPGPPRELAVM
FDSEAKPKLAAAYGEQAQIYSRVMRFYGISESELATRLQPLIDEQQAVTIAPYAKTNEVTLRLSAQAMTETAARGMIDKV
DHQIKATIGPYFYDYGDDNSLVTTVINQMIAAKLSITAAESLTAGLFQSTIGSVSGVSAIFPGGFVTYANEAKHQLVNVP
QAIIDAEGVVSEATAKAMASGAKQQLNTDVGISFTGVAGPGTLEGQPAGTVWIGLAYRDRPVKAKQYHFAGNRQQIRERS
VMAGLDLLRHALNEDTDLKK

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=333961 EPT58_RS08100 WP_053267776.1 1670662..1671924(+) (cinA) [Lactiplantibacillus plantarum strain 12_3]
ATGCAAGCAGAAATAATCGCGGTTGGTACCGAGATTTTACTGGGTCAGATTACGAACACGAATAGTACGTACATCGCACG
TGGATTGGCCGAATTAGGAATTGATAGCTATTATCAAACGGTGGTTGGTGATAATCGGCAACGTTTGTCGACCGTCATTG
AAATTGCGGCCCAGCGGAATGACTTAGTTATTTTAACGGGTGGTTTGGGGCCGACCAAGGATGACTTGACGAAGCAGACG
CTCGCGCATTATTTGAATGTTGCCTTGGTTGAAGATCAGGCAGCAATGCAAAAAATTACGGCCTGGTTTGCCACTAATGA
CAAAGTAATGACGGCCAACAACCGATTACAGGCATTGTATCCGGCAGGCGCGCAACCGTTGACTAATCATAACGGAATGG
CTGTTGGTGCGTTTTATCAGTCAGAAAATAGTGCTGATTTCTTGTTATTGCCAGGTCCACCCCGTGAGTTAGCCGTAATG
TTTGATTCTGAGGCAAAACCGAAATTGGCAGCTGCATATGGGGAACAAGCCCAAATCTATTCGCGAGTGATGCGTTTTTA
TGGCATCAGTGAGTCTGAATTGGCGACCCGGTTGCAACCCTTGATTGATGAACAGCAGGCGGTTACGATTGCACCCTATG
CCAAGACTAACGAGGTTACCCTCAGATTAAGTGCCCAAGCTATGACGGAAACGGCTGCAAGGGGAATGATCGACAAAGTT
GACCACCAGATCAAGGCTACCATTGGGCCGTACTTTTACGATTATGGAGACGATAACTCGTTAGTTACTACTGTTATTAA
TCAAATGATTGCGGCTAAGCTGAGTATTACAGCCGCTGAAAGCTTAACAGCTGGGCTGTTTCAGAGTACCATCGGCAGTG
TGTCCGGGGTCTCCGCAATCTTTCCAGGCGGCTTTGTAACGTATGCGAATGAGGCCAAACATCAGCTAGTGAACGTTCCA
CAAGCAATTATTGACGCTGAGGGCGTGGTTTCAGAAGCGACCGCTAAGGCCATGGCGAGTGGTGCTAAGCAGCAGCTAAA
TACTGATGTTGGTATCAGTTTTACAGGCGTTGCCGGTCCAGGAACCTTGGAAGGTCAACCGGCTGGAACGGTATGGATTG
GTCTTGCTTACCGTGATCGACCCGTGAAGGCCAAGCAGTACCATTTTGCTGGTAATCGACAACAAATTCGGGAACGCAGT
GTGATGGCCGGGTTAGACCTATTGAGACATGCATTGAATGAAGATACGGACTTAAAAAAATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(181-253)

Competence-damaged protein (CinA)

(260-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

48.113

100

0.486
  cinA Streptococcus pneumoniae TIGR4

47.877

100

0.483
  cinA Streptococcus pneumoniae Rx1

47.877

100

0.483
  cinA Streptococcus pneumoniae R6

47.877

100

0.483
  cinA Streptococcus pneumoniae D39

47.642

100

0.481
  cinA Streptococcus mitis NCTC 12261

46.934

100

0.474
  cinA Streptococcus mutans UA159

47.47

98.81

0.469
  cinA Bacillus subtilis subsp. subtilis str. 168

44.068

98.333

0.433
  cinA Streptococcus suis isolate S10

39.423

99.048

0.39

Multiple sequence alignment