Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ENC22_RS06675 Genome accession   NZ_CP034836
Coordinates   1489736..1490956 (-) Length   406 a.a.
NCBI ID   WP_127969021.1    Uniprot ID   A0AAE5XFP4
Organism   Hahella sp. KA22     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1484736..1495956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ENC22_RS30895 - 1485789..1486112 (+) 324 WP_164887210.1 PilZ domain-containing protein -
  ENC22_RS06650 (ENC22_06650) tsaA 1486102..1486818 (-) 717 WP_127969016.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -
  ENC22_RS06655 (ENC22_06655) - 1486828..1487697 (-) 870 WP_127969017.1 hypothetical protein -
  ENC22_RS06660 (ENC22_06660) yacG 1487919..1488155 (-) 237 WP_127969018.1 DNA gyrase inhibitor YacG -
  ENC22_RS06665 (ENC22_06665) coaE 1488145..1488771 (-) 627 WP_127969019.1 dephospho-CoA kinase -
  ENC22_RS06670 (ENC22_06670) pilD 1488791..1489669 (-) 879 WP_127969020.1 A24 family peptidase Machinery gene
  ENC22_RS06675 (ENC22_06675) pilC 1489736..1490956 (-) 1221 WP_127969021.1 type II secretion system F family protein Machinery gene
  ENC22_RS06680 (ENC22_06680) pilB 1490960..1492672 (-) 1713 WP_127969022.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ENC22_RS06685 (ENC22_06685) pilE 1492993..1493436 (+) 444 WP_127969023.1 pilin Machinery gene
  ENC22_RS06690 (ENC22_06690) - 1493615..1495411 (+) 1797 WP_127969024.1 hypothetical protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 43964.38 Da        Isoelectric Point: 9.0582

>NTDB_id=333332 ENC22_RS06675 WP_127969021.1 1489736..1490956(-) (pilC) [Hahella sp. KA22]
MAQAANKSSTFVWEGTDRKGNKTKGETSGANVALVKAQLRKQGINPTKVKKKAESILGKRTKTITPFDIAIFTRQMATMM
KAGVPLVQSFDIVADGLEHPSLRELVLDIKNEVAAGNSFAGALAKHPRHFDDLFCNLIDSGEKSGALETMLDRVASYLEK
TETLKKKVKKALTYPIAVIVVAIVVTGILLVKVVPQFQELFQGFGADLPAFTQVVINLSVIMQEYWFVFLISIVGSIFAF
KEAKRRSEKVSNAVDKYILKLPIVGDILYKSTVARFARVLSTTFAAGVPLVDALDSVAGATGNAVFKQAVHKIRDDVSSG
TQLQYSMKSTGVFPVMAIQLTSIGEESGALDDMLEKVADHYEAEVDDAVDNLTALMEPMIMAVLGVLVGGLIVAMYLPIF
QLGSVV

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=333332 ENC22_RS06675 WP_127969021.1 1489736..1490956(-) (pilC) [Hahella sp. KA22]
ATGGCTCAAGCAGCAAATAAAAGCTCCACCTTCGTTTGGGAGGGCACAGATCGAAAGGGGAATAAAACAAAGGGTGAGAC
TAGCGGAGCCAATGTGGCTCTGGTTAAGGCTCAGCTTAGGAAACAGGGAATAAACCCAACCAAGGTCAAAAAGAAAGCAG
AAAGCATATTAGGAAAACGAACAAAGACGATTACTCCCTTCGATATTGCCATCTTCACCCGACAGATGGCGACAATGATG
AAAGCCGGTGTGCCACTCGTACAGTCTTTCGACATTGTAGCGGATGGTTTAGAGCACCCGTCACTGAGAGAGCTAGTTTT
AGACATAAAAAATGAAGTCGCGGCGGGGAATAGTTTTGCAGGTGCGCTGGCAAAGCATCCAAGACACTTTGATGACCTAT
TTTGCAACCTCATTGACTCAGGAGAAAAATCCGGGGCCCTTGAGACTATGCTGGACCGAGTTGCAAGCTATCTGGAAAAA
ACAGAAACTCTTAAGAAAAAAGTTAAAAAGGCCCTTACTTATCCTATTGCTGTAATAGTTGTGGCTATTGTTGTTACCGG
TATACTTCTCGTAAAGGTTGTACCCCAGTTCCAAGAGTTATTCCAAGGTTTTGGGGCAGACTTACCAGCATTTACTCAAG
TGGTCATCAATCTTTCGGTCATAATGCAGGAGTATTGGTTTGTATTCCTCATAAGTATTGTCGGATCAATTTTTGCCTTT
AAAGAAGCAAAAAGACGATCAGAAAAAGTATCAAATGCTGTAGATAAATATATTCTCAAGCTGCCTATTGTTGGGGATAT
CCTCTATAAGTCTACTGTTGCAAGATTTGCCAGGGTCTTATCTACAACTTTCGCAGCCGGTGTACCTCTGGTTGACGCGC
TAGACTCAGTAGCAGGGGCCACGGGTAATGCTGTATTCAAGCAGGCCGTCCATAAAATCCGTGATGATGTGTCCTCGGGA
ACTCAACTACAGTACAGCATGAAATCTACAGGGGTTTTCCCCGTAATGGCTATTCAGCTAACTTCGATTGGCGAAGAGTC
AGGCGCACTCGATGATATGCTTGAGAAAGTTGCAGATCATTATGAAGCGGAAGTTGATGACGCAGTCGACAACCTTACAG
CCTTAATGGAACCAATGATCATGGCCGTCCTCGGCGTGCTTGTTGGTGGGTTGATCGTCGCAATGTACCTTCCTATATTC
CAATTGGGCTCCGTGGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

68.966

100

0.69
  pilC Acinetobacter baumannii D1279779

62.963

99.754

0.628
  pilC Acinetobacter baylyi ADP1

62.217

97.783

0.608
  pilC Legionella pneumophila strain ERS1305867

54.156

97.783

0.53
  pilG Neisseria gonorrhoeae MS11

44.913

99.261

0.446
  pilG Neisseria meningitidis 44/76-A

44.913

99.261

0.446
  pilC Vibrio cholerae strain A1552

41.162

97.537

0.401
  pilC Vibrio campbellii strain DS40M4

39.655

100

0.397

Multiple sequence alignment