Detailed information NTG0033186

Bioinformatically predicted

Overview

• Name: comGD/cglD
• Type: Machinery gene
• Locus tag: SPJ_RS10200
• Genome accession: NC_012466
• Coordinates: 1913471..1913875 (-)
• Length: 134 a.a.
• NCBI ID: WP_000588030.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae JJA
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1908471..1918875

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SPJ_RS10165 (SPJ_2048)	rnpA	1908893..1909264 (-)	372	WP_000739246.1	ribonuclease P protein component	-
SPJ_RS13615 (SPJ_2049)	-	1909281..1909412 (-)	132	WP_000768904.1	hypothetical protein	-
SPJ_RS10170 (SPJ_2050)	-	1909413..1910603 (-)	1191	WP_000167771.1	acetate kinase	-
SPJ_RS10175 (SPJ_2051)	comYH	1910654..1911607 (-)	954	WP_000345122.1	class I SAM-dependent methyltransferase	Machinery gene
SPJ_RS10180 (SPJ_2052)	-	1911668..1912255 (-)	588	WP_000679779.1	class I SAM-dependent methyltransferase	-
SPJ_RS10185 (SPJ_2053)	comGG/cglG	1912358..1912804 (-)	447	WP_001811371.1	competence type IV pilus minor pilin ComGG	Machinery gene
SPJ_RS10190 (SPJ_2054)	comGF/cglF	1912782..1913243 (-)	462	WP_000250539.1	competence type IV pilus minor pilin ComGF	Machinery gene
SPJ_RS10195 (SPJ_2055)	comGE/cglE	1913206..1913508 (-)	303	WP_000413382.1	competence type IV pilus minor pilin ComGE	Machinery gene
SPJ_RS10200 (SPJ_2056)	comGD/cglD	1913471..1913875 (-)	405	WP_000588030.1	competence type IV pilus minor pilin ComGD	Machinery gene
SPJ_RS10205 (SPJ_2057)	comGC/cglC	1913868..1914194 (-)	327	WP_000738625.1	competence type IV pilus major pilin ComGC	Machinery gene
SPJ_RS10210 (SPJ_2058)	comGB/cglB	1914196..1915212 (-)	1017	WP_078134418.1	competence type IV pilus assembly protein ComGB	Machinery gene
SPJ_RS10215 (SPJ_2059)	comGA/cglA/cilD	1915160..1916101 (-)	942	WP_000249573.1	competence type IV pilus ATPase ComGA	Machinery gene
SPJ_RS10220 (SPJ_2060)	-	1916177..1916542 (-)	366	WP_000286415.1	DUF1033 family protein	-
SPJ_RS10225 (SPJ_2061)	-	1916693..1917751 (-)	1059	WP_000649468.1	zinc-dependent alcohol dehydrogenase family protein	-

Sequence

Protein

• Length: 134 a.a.
• Molecular weight: 14668.85 Da
• Isoelectric Point: 10.2164

>NTDB_id=33186 SPJ_RS10200 WP_000588030.1 1913471..1913875(-) (comGD/cglD) [Streptococcus pneumoniae JJA]
MIKAFTMLESLLVLGLVSILALGLSSSVQSTFAAVEEQIFFMEFEELYRETQKRSVASQQKTSLNLDGQTLSNGSQKLTV
PKGIQAPSGQSITFDRAGGNSSLAKVEFQTSKGAIRYQLYLGNGKIKRIKETKN

Nucleotide

• Length: 405 bp

>NTDB_id=33186 SPJ_RS10200 WP_000588030.1 1913471..1913875(-) (comGD/cglD) [Streptococcus pneumoniae JJA]
ATGATTAAGGCCTTTACCATGCTGGAAAGTCTCTTGGTTTTGGGACTTGTGAGTATCCTTGCCTTGGGCTTATCCAGCTC
TGTCCAGTCCACTTTTGCAGCAGTAGAGGAGCAGATTTTCTTTATGGAGTTTGAAGAACTCTATCGGGAAACCCAAAAAC
GCAGTGTAGCCAGTCAGCAAAAGACTAGTCTAAATTTAGATGGGCAGACGCTTAGCAATGGCAGTCAAAAGTTGACAGTT
CCTAAAGGAATTCAGGCACCATCAGGCCAAAGTATTACATTTGACCGAGCTGGGGGCAATTCGTCCCTGGCTAAGGTTGA
ATTTCAGACCAGTAAAGGAGCGATTCGCTATCAATTATATCTAGGAAATGGAAAAATTAAACGCATTAAGGAAACAAAAA
ATTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGD/cglD	Streptococcus pneumoniae TIGR4	97.761	100	0.978
comGD/cglD	Streptococcus pneumoniae Rx1	97.015	100	0.97
comGD/cglD	Streptococcus pneumoniae D39	97.015	100	0.97
comGD/cglD	Streptococcus pneumoniae R6	97.015	100	0.97
comGD/cglD	Streptococcus mitis SK321	96.269	100	0.963
comGD/cglD	Streptococcus mitis NCTC 12261	96.992	99.254	0.963
comYD	Streptococcus gordonii str. Challis substr. CH1	59.055	94.776	0.56
comYD	Streptococcus mutans UA140	48.438	95.522	0.463
comYD	Streptococcus mutans UA159	48.438	95.522	0.463