Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   SPJ_RS10175 Genome accession   NC_012466
Coordinates   1910654..1911607 (-) Length   317 a.a.
NCBI ID   WP_000345122.1    Uniprot ID   A0A0I7TJC1
Organism   Streptococcus pneumoniae JJA     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1905654..1916607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPJ_RS10150 (SPJ_2045) - 1906415..1907038 (-) 624 WP_000932655.1 hypothetical protein -
  SPJ_RS10155 (SPJ_2046) jag 1907089..1908075 (-) 987 WP_000260014.1 RNA-binding cell elongation regulator Jag/EloR -
  SPJ_RS10160 (SPJ_2047) - 1908094..1908918 (-) 825 WP_000727909.1 membrane protein insertase YidC -
  SPJ_RS10165 (SPJ_2048) rnpA 1908893..1909264 (-) 372 WP_000739246.1 ribonuclease P protein component -
  SPJ_RS13615 (SPJ_2049) - 1909281..1909412 (-) 132 WP_000768904.1 hypothetical protein -
  SPJ_RS10170 (SPJ_2050) - 1909413..1910603 (-) 1191 WP_000167771.1 acetate kinase -
  SPJ_RS10175 (SPJ_2051) comYH 1910654..1911607 (-) 954 WP_000345122.1 class I SAM-dependent methyltransferase Machinery gene
  SPJ_RS10180 (SPJ_2052) - 1911668..1912255 (-) 588 WP_000679779.1 class I SAM-dependent methyltransferase -
  SPJ_RS10185 (SPJ_2053) comGG/cglG 1912358..1912804 (-) 447 WP_001811371.1 competence type IV pilus minor pilin ComGG Machinery gene
  SPJ_RS10190 (SPJ_2054) comGF/cglF 1912782..1913243 (-) 462 WP_000250539.1 competence type IV pilus minor pilin ComGF Machinery gene
  SPJ_RS10195 (SPJ_2055) comGE/cglE 1913206..1913508 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  SPJ_RS10200 (SPJ_2056) comGD/cglD 1913471..1913875 (-) 405 WP_000588030.1 competence type IV pilus minor pilin ComGD Machinery gene
  SPJ_RS10205 (SPJ_2057) comGC/cglC 1913868..1914194 (-) 327 WP_000738625.1 competence type IV pilus major pilin ComGC Machinery gene
  SPJ_RS10210 (SPJ_2058) comGB/cglB 1914196..1915212 (-) 1017 WP_078134418.1 competence type IV pilus assembly protein ComGB Machinery gene
  SPJ_RS10215 (SPJ_2059) comGA/cglA/cilD 1915160..1916101 (-) 942 WP_000249573.1 competence type IV pilus ATPase ComGA Machinery gene
  SPJ_RS10220 (SPJ_2060) - 1916177..1916542 (-) 366 WP_000286415.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35745.94 Da        Isoelectric Point: 4.2706

>NTDB_id=33182 SPJ_RS10175 WP_000345122.1 1910654..1911607(-) (comYH) [Streptococcus pneumoniae JJA]
MDFEKIEQAYTYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELNQVKDNNQALKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVFIVEELFKEEEITILEMGSGMGILGATFLTSLDKKVDYLGMEMDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAVASRHQVASSQEHTYAHHLLMEQGLKYLKSDGYAIFLAPSNLLTSPQ
SDLLKEWLKEEASLVAMISLPENLFANAKQSKTIFILQKKNEIAVEPFVYPLASLQDASVLMKFKENFQKWTQGTEI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=33182 SPJ_RS10175 WP_000345122.1 1910654..1911607(-) (comYH) [Streptococcus pneumoniae JJA]
ATGGATTTTGAAAAAATTGAACAAGCTTATACCTATTTACTAGAGAATGTCCAAGTTATCCAAAGTGATTTGGCGACCAA
CTTTTATGACGCCTTGGTGGAGCAAAACAGCATCTATCTGGATGGTGAAACTGAGCTAAACCAGGTCAAAGACAACAATC
AGGCCCTTAAGCGTTTAGCACTACGCAAAGAAGAATGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCTGGGCAAACA
GAACCCTTGCAGGCCAATCACCAGTTTACACCAGATGCCATTGCTTTGCTTTTGGTGTTTATTGTGGAAGAGTTGTTTAA
AGAGGAGGAAATTACTATCCTCGAAATGGGTTCTGGGATGGGAATTCTAGGCGCTACTTTCTTGACCTCGCTTGATAAAA
AGGTGGATTACTTGGGAATGGAAATGGATGATTTGCTGATTGATCTGGCAGCTAGCATGGCAGATGTAATTGGTTTGCAG
GCTGGCTTTGTCCAAGGAGATGCCGTTCGTCCACAAATGCTCAAAGAAAGCGATGTGGTCATCAGTGACTTGCCTGTTGG
CTATTATCCTGATGATGCCGTTGCGTCGCGCCATCAAGTTGCTTCTAGCCAAGAACATACTTACGCCCATCACTTGCTCA
TGGAACAAGGGCTTAAGTACCTCAAGTCAGACGGATACGCTATTTTTCTAGCTCCGAGTAATTTGTTGACCAGTCCTCAA
AGTGATTTGTTAAAAGAATGGCTGAAAGAAGAGGCGAGTCTGGTTGCTATGATTAGTCTGCCTGAAAATCTCTTTGCTAA
TGCCAAACAATCTAAGACTATTTTTATCTTACAGAAGAAAAATGAAATAGCAGTAGAGCCTTTTGTTTATCCACTTGCTA
GCTTGCAAGATGCAAGTGTTTTAATGAAATTTAAAGAAAATTTTCAAAAATGGACTCAAGGTACTGAAATATAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0I7TJC1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

53.994

98.738

0.533
  comYH Streptococcus mutans UA159

53.674

98.738

0.53

Multiple sequence alignment