Detailed information NTG0331754

Bioinformatically predicted

Overview

• Name: comGF/cglF
• Type: Machinery gene
• Locus tag: EHW89_RS01060
• Genome accession: NZ_CP034543
• Coordinates: 203596..204033 (+)
• Length: 145 a.a.
• NCBI ID: WP_003032293.1
• Uniprot ID: -
• Organism: Streptococcus periodonticum strain KCOM 2412
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 198596..209033

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EHW89_RS01025 (EHW89_01025)	glnA	198770..200116 (+)	1347	WP_126466436.1	type I glutamate--ammonia ligase	-
EHW89_RS01030 (EHW89_01030)	-	200305..200670 (+)	366	WP_126466437.1	DUF1033 family protein	-
EHW89_RS01035 (EHW89_01035)	comYA	200740..201681 (+)	942	WP_126466438.1	competence type IV pilus ATPase ComGA	Machinery gene
EHW89_RS01040 (EHW89_01040)	comYB	201623..202645 (+)	1023	WP_193552982.1	competence type IV pilus assembly protein ComGB	Machinery gene
EHW89_RS01045 (EHW89_01045)	comYC	202642..202959 (+)	318	WP_126466440.1	competence type IV pilus major pilin ComGC	Machinery gene
EHW89_RS01050 (EHW89_01050)	comYD	202919..203347 (+)	429	WP_003026995.1	competence type IV pilus minor pilin ComGD	Machinery gene
EHW89_RS01055 (EHW89_01055)	comGE/cglE	203319..203612 (+)	294	WP_003032294.1	competence type IV pilus minor pilin ComGE	Machinery gene
EHW89_RS01060 (EHW89_01060)	comGF/cglF	203596..204033 (+)	438	WP_003032293.1	competence type IV pilus minor pilin ComGF	Machinery gene
EHW89_RS01065 (EHW89_01065)	comGG	204014..204340 (+)	327	WP_018543596.1	competence type IV pilus minor pilin ComGG	-
EHW89_RS01070 (EHW89_01070)	comYH	204425..205378 (+)	954	WP_126466441.1	class I SAM-dependent methyltransferase	Machinery gene
EHW89_RS01075 (EHW89_01075)	-	205425..206624 (+)	1200	WP_126466442.1	acetate kinase	-
EHW89_RS01080 (EHW89_01080)	glmS	207013..208827 (+)	1815	WP_126466443.1	glutamine--fructose-6-phosphate transaminase (isomerizing)	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16706.26 Da
• Isoelectric Point: 9.6893

>NTDB_id=331754 EHW89_RS01060 WP_003032293.1 203596..204033(+) (comGF/cglF) [Streptococcus periodonticum strain KCOM 2412]
MFKANKVKAFTLLEALVALFVISGSVLLFQSMTRLLASEVQARQHSEQREWLLFADQLEAELARSSFEKVENNRLYMKQD
GKVIAFGKSSGQDFRKTNANGKGYQPMVYDVEKAEISQKNELIHIRMTFKRGLEREFVYCVETKS

Nucleotide

• Length: 438 bp

>NTDB_id=331754 EHW89_RS01060 WP_003032293.1 203596..204033(+) (comGF/cglF) [Streptococcus periodonticum strain KCOM 2412]
ATGTTCAAGGCAAATAAAGTGAAAGCTTTTACCCTTTTAGAGGCTCTGGTTGCCCTCTTTGTCATTAGTGGAAGTGTGTT
GCTGTTTCAATCTATGACGCGCCTTCTAGCTTCTGAAGTCCAAGCTCGTCAACACAGTGAACAACGAGAATGGCTTTTGT
TTGCAGATCAACTAGAAGCAGAGTTGGCTCGTTCTTCATTTGAAAAGGTGGAGAATAATCGTTTATATATGAAACAGGAC
GGCAAGGTGATTGCATTTGGAAAGTCAAGTGGACAGGATTTCAGAAAAACTAATGCGAATGGGAAAGGTTACCAGCCGAT
GGTTTATGATGTGGAAAAAGCAGAAATCTCACAGAAAAATGAGCTGATTCATATCAGAATGACGTTTAAGCGAGGATTGG
AAAGGGAGTTCGTCTATTGTGTGGAAACAAAGAGTTAA

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (38-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGF/cglF	Streptococcus pneumoniae R6	65.714	96.552	0.634
comGF/cglF	Streptococcus pneumoniae TIGR4	65.714	96.552	0.634
comGF/cglF	Streptococcus pneumoniae Rx1	65.714	96.552	0.634
comGF/cglF	Streptococcus pneumoniae D39	65.714	96.552	0.634
comGF/cglF	Streptococcus mitis NCTC 12261	65	96.552	0.628
comGF/cglF	Streptococcus mitis SK321	65	96.552	0.628
comYF	Streptococcus mutans UA159	43.571	96.552	0.421
comYF	Streptococcus mutans UA140	43.571	96.552	0.421
comGF	Lactococcus lactis subsp. cremoris KW2	42.537	92.414	0.393