Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE/cglE   Type   Machinery gene
Locus tag   EHW89_RS01055 Genome accession   NZ_CP034543
Coordinates   203319..203612 (+) Length   97 a.a.
NCBI ID   WP_003032294.1    Uniprot ID   -
Organism   Streptococcus periodonticum strain KCOM 2412     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 198319..208612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHW89_RS01020 (EHW89_01020) - 198372..198731 (+) 360 WP_003028467.1 MerR family transcriptional regulator -
  EHW89_RS01025 (EHW89_01025) glnA 198770..200116 (+) 1347 WP_126466436.1 type I glutamate--ammonia ligase -
  EHW89_RS01030 (EHW89_01030) - 200305..200670 (+) 366 WP_126466437.1 DUF1033 family protein -
  EHW89_RS01035 (EHW89_01035) comYA 200740..201681 (+) 942 WP_126466438.1 competence type IV pilus ATPase ComGA Machinery gene
  EHW89_RS01040 (EHW89_01040) comYB 201623..202645 (+) 1023 WP_193552982.1 competence type IV pilus assembly protein ComGB Machinery gene
  EHW89_RS01045 (EHW89_01045) comYC 202642..202959 (+) 318 WP_126466440.1 competence type IV pilus major pilin ComGC Machinery gene
  EHW89_RS01050 (EHW89_01050) comYD 202919..203347 (+) 429 WP_003026995.1 competence type IV pilus minor pilin ComGD Machinery gene
  EHW89_RS01055 (EHW89_01055) comGE/cglE 203319..203612 (+) 294 WP_003032294.1 competence type IV pilus minor pilin ComGE Machinery gene
  EHW89_RS01060 (EHW89_01060) comGF/cglF 203596..204033 (+) 438 WP_003032293.1 competence type IV pilus minor pilin ComGF Machinery gene
  EHW89_RS01065 (EHW89_01065) comGG 204014..204340 (+) 327 WP_018543596.1 competence type IV pilus minor pilin ComGG -
  EHW89_RS01070 (EHW89_01070) comYH 204425..205378 (+) 954 WP_126466441.1 class I SAM-dependent methyltransferase Machinery gene
  EHW89_RS01075 (EHW89_01075) - 205425..206624 (+) 1200 WP_126466442.1 acetate kinase -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10941.89 Da        Isoelectric Point: 10.8025

>NTDB_id=331753 EHW89_RS01055 WP_003032294.1 203319..203612(+) (comGE/cglE) [Streptococcus periodonticum strain KCOM 2412]
MGNLRKQRVRGTILLEALLALAVFATIVTLLLGQIHQSRKAENDLLREEEVLRVAKMALQTKQSHLTMNGIKVRVETSQQ
GIQIYHGRELILDVQGK

Nucleotide


Download         Length: 294 bp        

>NTDB_id=331753 EHW89_RS01055 WP_003032294.1 203319..203612(+) (comGE/cglE) [Streptococcus periodonticum strain KCOM 2412]
ATGGGAAATTTAAGAAAACAACGCGTTAGAGGAACGATTTTATTAGAGGCGCTGCTGGCTTTGGCTGTTTTTGCGACAAT
TGTGACCCTGTTGTTGGGACAAATTCACCAGTCTCGAAAAGCAGAAAATGACTTGCTTAGAGAAGAAGAAGTTTTAAGGG
TAGCTAAAATGGCTTTGCAAACAAAGCAAAGTCATCTGACAATGAATGGTATTAAAGTGCGTGTTGAAACAAGTCAACAA
GGTATTCAGATTTATCATGGAAGGGAACTAATTCTTGATGTTCAAGGCAAATAA

Domains

Predicted by InterproScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE/cglE Streptococcus pneumoniae Rx1

52.632

97.938

0.515
  comGE/cglE Streptococcus pneumoniae D39

52.632

97.938

0.515
  comGE/cglE Streptococcus pneumoniae R6

52.632

97.938

0.515
  comGE/cglE Streptococcus pneumoniae TIGR4

52.632

97.938

0.515
  comGE/cglE Streptococcus mitis NCTC 12261

51.579

97.938

0.505
  comGE/cglE Streptococcus mitis SK321

51.579

97.938

0.505
  comYE Streptococcus mutans UA140

43.434

100

0.443
  comYE Streptococcus mutans UA159

43.434

100

0.443

Multiple sequence alignment