Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   EJ378_RS08650 Genome accession   NZ_CP034541
Coordinates   1783942..1785183 (+) Length   413 a.a.
NCBI ID   WP_126426541.1    Uniprot ID   -
Organism   Brevibacillus marinus strain SCSIO 07484     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1778942..1790183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJ378_RS08620 ymfI 1778948..1779682 (+) 735 WP_126426531.1 elongation factor P 5-aminopentanone reductase -
  EJ378_RS08625 - 1779791..1780054 (+) 264 WP_126426533.1 DUF3243 domain-containing protein -
  EJ378_RS08630 - 1780164..1780952 (+) 789 WP_126429533.1 DUF3388 domain-containing protein -
  EJ378_RS08635 - 1780956..1781822 (+) 867 WP_126426535.1 helix-turn-helix domain-containing protein -
  EJ378_RS08640 rimO 1781944..1783284 (+) 1341 WP_126426537.1 30S ribosomal protein S12 methylthiotransferase RimO -
  EJ378_RS08645 pgsA 1783285..1783869 (+) 585 WP_126426539.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  EJ378_RS08650 cinA 1783942..1785183 (+) 1242 WP_126426541.1 competence/damage-inducible protein A Machinery gene
  EJ378_RS08655 - 1785189..1786778 (+) 1590 WP_126426543.1 DEAD/DEAH box helicase -
  EJ378_RS08660 recA 1787317..1788375 (+) 1059 WP_126426545.1 recombinase RecA Machinery gene
  EJ378_RS08665 - 1788459..1789118 (+) 660 WP_126426547.1 RecX family transcriptional regulator -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44740.51 Da        Isoelectric Point: 6.1800

>NTDB_id=331723 EJ378_RS08650 WP_126426541.1 1783942..1785183(+) (cinA) [Brevibacillus marinus strain SCSIO 07484]
MRAELIAVGTELLLGQIANTNAQFLSQRLAALGINVYFHTVVGDNDERLLFVTRQAAERSDLVIFTGGLGPTQDDLTKET
VAAHLGLPLVTDEEAMRRIAAFFERRGIKMSENNRKQALVIEGCTVFPNDRGMAPGMALTRDGTTYVLLPGPPSELNPMF
DRYVFPFLSRLLPARQVFHSRVLRFFGIGESALEERLLDLIEQQTNPTIAPYAKDFEVTLRITARADSVEAAEQLIAPVE
AQIRSRVGEYIYGEGETQLHEVFVQALRRQQVTVACAESCTGGALSALITSVPGSSAAFRGGIVCYSNEVKQKLLGIPAE
VLAQDGAVSESVARLLAEHVRLSCDATVGIALTGVAGPDPLEGKPVGLVYLGIAVQGLPVLVKQLNLAGHREAIIGRAAK
AAMFHTLQRLKER

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=331723 EJ378_RS08650 WP_126426541.1 1783942..1785183(+) (cinA) [Brevibacillus marinus strain SCSIO 07484]
ATGAGAGCGGAATTGATCGCGGTTGGCACAGAGTTGCTGCTTGGCCAGATTGCCAATACCAACGCCCAGTTTTTATCGCA
AAGGCTGGCCGCTTTGGGCATTAACGTTTATTTTCATACGGTAGTTGGCGATAATGACGAACGTCTGCTGTTTGTTACCC
GCCAGGCGGCTGAACGTTCCGATCTGGTTATTTTTACCGGCGGGTTGGGGCCGACCCAGGATGATCTGACCAAAGAGACG
GTAGCGGCGCATCTGGGACTGCCGCTCGTCACGGACGAGGAAGCGATGCGCAGAATTGCCGCGTTTTTCGAAAGGCGCGG
CATCAAGATGAGCGAAAATAACCGGAAACAGGCGCTCGTCATCGAGGGCTGCACGGTCTTTCCCAACGACCGCGGGATGG
CTCCGGGGATGGCGCTCACGCGTGACGGGACGACGTATGTGCTGCTGCCGGGGCCGCCCAGCGAACTGAACCCGATGTTT
GACCGGTACGTCTTCCCCTTCCTGAGTCGTTTGCTGCCCGCCAGGCAAGTGTTTCACTCGCGCGTTCTCCGCTTTTTCGG
TATTGGCGAATCCGCGCTGGAAGAACGTCTGCTCGATCTGATCGAGCAGCAGACAAACCCGACGATCGCCCCTTATGCCA
AAGATTTTGAAGTGACCTTGCGCATCACGGCACGTGCCGATTCGGTAGAGGCGGCGGAACAGCTGATTGCTCCGGTCGAA
GCGCAGATCCGCAGCCGCGTGGGTGAATACATATACGGTGAAGGTGAAACGCAACTGCACGAAGTGTTTGTCCAAGCATT
GCGGCGACAGCAGGTAACGGTCGCCTGTGCCGAAAGCTGCACAGGCGGCGCGCTGTCAGCCCTGATTACCTCCGTCCCGG
GCAGCTCGGCTGCATTTCGCGGCGGTATCGTCTGTTACAGCAACGAAGTGAAACAGAAGCTGCTGGGGATCCCGGCTGAG
GTGTTGGCCCAAGACGGAGCCGTCAGCGAATCGGTGGCCCGCCTGTTGGCGGAGCACGTGCGCCTCTCCTGCGATGCGAC
GGTTGGCATCGCGCTGACCGGGGTGGCAGGACCCGATCCGCTGGAGGGAAAACCGGTTGGCCTGGTGTACCTGGGCATTG
CCGTACAGGGCCTGCCCGTCCTGGTCAAGCAGCTCAACCTGGCGGGGCACCGCGAGGCGATCATTGGGCGGGCAGCGAAA
GCGGCGATGTTTCACACGTTGCAACGTTTAAAAGAAAGGTGA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

50.971

99.758

0.508
  cinA Streptococcus pneumoniae TIGR4

47.494

100

0.482
  cinA Streptococcus mitis NCTC 12261

47.494

100

0.482
  cinA Streptococcus pneumoniae Rx1

47.255

100

0.479
  cinA Streptococcus pneumoniae R6

47.255

100

0.479
  cinA Streptococcus pneumoniae D39

47.017

100

0.477
  cinA Streptococcus mitis SK321

46.89

100

0.475
  cinA Streptococcus mutans UA159

47.558

94.189

0.448
  cinA Streptococcus suis isolate S10

43.401

95.4

0.414

Multiple sequence alignment