Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   EJF26_RS05845 Genome accession   NZ_CP034442
Coordinates   1165738..1167717 (-) Length   659 a.a.
NCBI ID   WP_000742240.1    Uniprot ID   F9P2Y6
Organism   Streptococcus oralis subsp. dentisani strain F0392     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1160738..1172717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJF26_RS05825 amiF 1161233..1162162 (-) 930 WP_001291316.1 ATP-binding cassette domain-containing protein Regulator
  EJF26_RS05830 amiE 1162173..1163240 (-) 1068 WP_000159696.1 ABC transporter ATP-binding protein Regulator
  EJF26_RS05835 amiD 1163249..1164175 (-) 927 WP_000103696.1 oligopeptide ABC transporter permease OppC Regulator
  EJF26_RS05840 amiC 1164175..1165671 (-) 1497 WP_000759922.1 ABC transporter permease Regulator
  EJF26_RS05845 amiA3 1165738..1167717 (-) 1980 WP_000742240.1 peptide ABC transporter substrate-binding protein Regulator
  EJF26_RS05855 - 1168244..1169575 (-) 1332 WP_000390012.1 hemolysin family protein -
  EJF26_RS05860 endA 1169715..1170539 (-) 825 WP_001036792.1 DNA/RNA non-specific endonuclease Machinery gene
  EJF26_RS05865 - 1170576..1170767 (-) 192 WP_000791880.1 DNA-directed RNA polymerase subunit beta -
  EJF26_RS05870 murA 1170757..1172037 (-) 1281 WP_000411896.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  EJF26_RS05875 - 1172060..1172290 (-) 231 WP_080563327.1 DUF1146 family protein -

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 72931.26 Da        Isoelectric Point: 5.0209

>NTDB_id=331355 EJF26_RS05845 WP_000742240.1 1165738..1167717(-) (amiA3) [Streptococcus oralis subsp. dentisani strain F0392]
MKKNRVLVAAGVALLAASTLAACGSSKSSGSTAPKTYGYVYSSDPETLDYLTSGKQSTKLATSNGIDGLFTNDKYGNLTP
AVAEDWSVSKDGLTYTYKIRKGVKWFTSEGEEYAEVTAKDFVNGLKHAADKKSEALYLAENSVKGLSDYLAGNSKDFSTV
GVKAVDDYTLEYTLNQPEPYWNSKMAYSIFWPLNEEFEKSKGDDFAKPTDPTSLLYNGPFLLKGLTAKSSIEFAKNEQYW
DKENVHLDKVTLAFYDGSDQESLERNFTSGAYSYARLFPTSSNYSKVAETYKDNIYYTPAGPGITGLGVNIDRQSYKYTA
KTTDEEKTSTKKALLNKDFRQALNFAVDRTAYSAQINGKEGAPLAVRNLFVKPDFVAAGDKTFGDLVTEKMAAYGDEWKN
VNFADGQDGLFNADKAKAELAKAKTALEAEGVKFPIHLDIPVDQTNKGYIARIQSFKQTVEKVLGEENVVIDIHQISKDE
ALNITYHAPNAAAEDWDLSGAVGWNPDYEDPSTYLDILKSTNKSQTKTYMGFDDPANPAVSQVGLKEYDKLVDEAAKETS
DLNVRYEKYAAAQAWLTDSSLFIPAMSGSGAAPFISRVVPFTASYSQSGDKSSDLYFKYIQLQDKVVTKAEYEQAREKWL
KEKKESNEKIQKELTNHVK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=331355 EJF26_RS05845 WP_000742240.1 1165738..1167717(-) (amiA3) [Streptococcus oralis subsp. dentisani strain F0392]
ATGAAAAAAAATAGGGTATTGGTTGCGGCAGGAGTTGCCCTATTAGCGGCTAGCACACTAGCTGCTTGCGGTTCTTCGAA
ATCGTCTGGTTCAACAGCGCCAAAAACTTATGGCTATGTTTATTCATCAGATCCTGAAACATTGGATTACCTTACTTCGG
GGAAACAAAGTACTAAATTAGCCACTTCAAATGGTATTGATGGTCTCTTTACAAATGACAAATATGGGAACTTGACTCCT
GCAGTTGCAGAAGACTGGTCAGTTTCAAAAGATGGTTTGACCTATACCTACAAAATCCGTAAAGGTGTCAAATGGTTTAC
CTCTGAGGGGGAAGAATATGCTGAAGTGACAGCTAAAGACTTTGTAAATGGTTTAAAACACGCAGCAGATAAAAAGTCAG
AAGCACTTTATCTAGCAGAGAATTCTGTTAAAGGGTTGTCTGACTATTTGGCAGGAAATTCAAAAGACTTTTCTACAGTA
GGTGTTAAGGCAGTTGATGATTATACTCTTGAGTATACATTGAACCAACCAGAACCATACTGGAACTCTAAAATGGCTTA
CTCAATCTTCTGGCCATTAAACGAAGAATTTGAAAAATCAAAAGGGGATGATTTTGCCAAACCAACGGATCCTACATCGT
TACTTTACAATGGCCCGTTCTTGCTGAAAGGTTTGACTGCCAAGTCTTCTATCGAGTTTGCGAAGAATGAACAATATTGG
GATAAGGAAAATGTTCATCTTGATAAAGTTACCCTCGCTTTCTATGACGGATCAGATCAAGAGTCTCTTGAACGGAACTT
TACAAGTGGAGCCTATAGCTATGCTCGTCTCTTCCCGACAAGTTCAAACTACTCTAAAGTAGCGGAGACCTACAAAGACA
ATATCTACTACACACCAGCTGGACCAGGAATCACTGGTTTGGGTGTAAATATTGACCGTCAAAGTTACAAATACACCGCT
AAAACAACTGACGAAGAAAAAACGTCAACTAAAAAAGCCCTTCTTAACAAAGACTTCCGTCAGGCCTTGAACTTTGCCGT
TGACCGTACAGCTTATTCAGCGCAAATCAATGGTAAAGAAGGTGCTCCTCTTGCAGTTCGTAACCTCTTTGTAAAACCAG
ATTTTGTCGCTGCGGGTGACAAGACCTTCGGTGACTTGGTAACTGAGAAGATGGCAGCTTATGGTGATGAGTGGAAGAAC
GTAAACTTTGCGGATGGTCAAGATGGACTCTTCAACGCAGATAAGGCCAAAGCAGAACTTGCAAAAGCTAAAACTGCATT
AGAAGCTGAAGGGGTGAAATTCCCAATCCATTTGGATATCCCAGTAGATCAAACAAACAAAGGGTATATTGCTCGTATCC
AATCCTTCAAACAGACAGTTGAAAAAGTGCTTGGTGAAGAAAATGTAGTCATTGACATTCATCAAATTTCTAAAGATGAG
GCATTAAATATCACTTACCATGCACCAAACGCAGCAGCAGAAGATTGGGATCTATCAGGTGCAGTTGGATGGAACCCAGA
CTATGAAGATCCATCAACTTACCTTGATATCCTCAAATCAACAAACAAGTCGCAAACCAAGACATACATGGGATTTGACG
ATCCAGCGAACCCAGCAGTTAGTCAAGTTGGTTTGAAAGAATACGATAAGTTAGTTGATGAAGCCGCTAAAGAAACCAGT
GATTTGAATGTTCGTTATGAGAAATACGCTGCAGCTCAGGCTTGGTTGACAGATAGCTCTCTCTTCATCCCTGCTATGTC
TGGTAGCGGTGCAGCACCATTCATTTCTCGTGTAGTACCATTCACAGCTTCTTATAGCCAATCTGGAGACAAGAGTTCAG
ATCTTTACTTCAAGTACATTCAGCTACAGGATAAGGTTGTAACGAAAGCTGAGTACGAACAAGCTCGTGAGAAATGGCTC
AAAGAGAAAAAAGAATCAAACGAAAAAATTCAAAAAGAATTGACAAATCACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F9P2Y6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMG 18311

68.939

100

0.69
  amiA3 Streptococcus thermophilus LMD-9

68.788

100

0.689
  amiA Streptococcus salivarius strain HSISS4

68.134

100

0.681

Multiple sequence alignment