Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   EJF26_RS05840 Genome accession   NZ_CP034442
Coordinates   1164175..1165671 (-) Length   498 a.a.
NCBI ID   WP_000759922.1    Uniprot ID   F9P2Y7
Organism   Streptococcus oralis subsp. dentisani strain F0392     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1159175..1170671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJF26_RS05820 - 1159706..1161145 (+) 1440 WP_001043423.1 TrkH family potassium uptake protein -
  EJF26_RS05825 amiF 1161233..1162162 (-) 930 WP_001291316.1 ATP-binding cassette domain-containing protein Regulator
  EJF26_RS05830 amiE 1162173..1163240 (-) 1068 WP_000159696.1 ABC transporter ATP-binding protein Regulator
  EJF26_RS05835 amiD 1163249..1164175 (-) 927 WP_000103696.1 oligopeptide ABC transporter permease OppC Regulator
  EJF26_RS05840 amiC 1164175..1165671 (-) 1497 WP_000759922.1 ABC transporter permease Regulator
  EJF26_RS05845 amiA3 1165738..1167717 (-) 1980 WP_000742240.1 peptide ABC transporter substrate-binding protein Regulator
  EJF26_RS05855 - 1168244..1169575 (-) 1332 WP_000390012.1 hemolysin family protein -
  EJF26_RS05860 endA 1169715..1170539 (-) 825 WP_001036792.1 DNA/RNA non-specific endonuclease Machinery gene

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55705.12 Da        Isoelectric Point: 9.1164

>NTDB_id=331354 EJF26_RS05840 WP_000759922.1 1164175..1165671(-) (amiC) [Streptococcus oralis subsp. dentisani strain F0392]
MKKYIFMRVLRSLVSIFLVTTLTYTIIYTMVPRKLIFKQDTNYNKIATTPDKRDNYENTVYERMGYIEYYDTKELQEKAS
TMDSSVTVDANETNKAIYEKYINQLGNGWTLGVFSESGQFYATREIPIFERVFKFYSNLLDIDHTNKIQDPENPNLERYL
RFENDPAIGWSLVGSGTKHKYLLYFNSQFPFVHQNFVNINLGDSYPTYANTPVLQVITQGQGQIKTSEVQFPTGKKTSSV
DIYSRTYKSPSQADAREVANYGKDDPYTATESNYQYPSMIASSAVAGLIGLIISYAIAIPLGSAMARHKNTWIDSFSTGA
LTFLLALPTIALVYIVRLIGSSIGLPDSFPILGAGDWRSYVLPAVILGLLGAPSTAIWIRRYMIDLQSQDFVRFARAKGL
SEKEISNKHIFKNAMVPLVSGIPGAVIGVIGGATLTETVFAFPGMGKMLIDSVKASNNSMVVGLVFIFTCISIFSLFVGD
IWMTMLDPRIKLTEKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=331354 EJF26_RS05840 WP_000759922.1 1164175..1165671(-) (amiC) [Streptococcus oralis subsp. dentisani strain F0392]
ATGAAGAAATATATTTTTATGCGTGTATTGCGTTCATTGGTGTCTATCTTCTTGGTGACAACCTTGACCTACACGATTAT
CTATACGATGGTTCCTCGAAAACTGATTTTCAAGCAGGATACCAACTATAACAAAATTGCAACGACGCCAGATAAACGGG
ACAATTATGAAAACACCGTTTATGAGCGGATGGGCTATATCGAGTACTACGATACCAAGGAGTTGCAAGAAAAAGCGAGC
ACAATGGACTCATCTGTAACCGTTGATGCCAATGAAACTAATAAGGCAATCTACGAAAAATACATCAACCAACTAGGGAA
TGGTTGGACACTCGGTGTATTCTCAGAAAGTGGTCAATTCTATGCTACGCGTGAAATTCCAATTTTTGAACGTGTTTTCA
AATTCTACTCGAACTTGCTCGACATTGATCATACAAACAAGATTCAAGACCCTGAAAATCCAAACTTGGAACGTTATCTT
CGTTTTGAAAATGACCCTGCTATTGGTTGGTCATTGGTTGGTTCGGGTACAAAGCATAAATATCTTTTGTATTTCAATAG
TCAATTTCCATTTGTACACCAAAACTTTGTGAACATTAACTTGGGAGACTCTTACCCAACTTATGCAAACACACCAGTGC
TTCAAGTTATCACACAGGGTCAGGGACAAATCAAGACATCAGAAGTTCAATTCCCTACGGGTAAAAAGACTTCATCTGTA
GATATTTACTCTCGTACCTACAAATCTCCAAGTCAAGCAGATGCGCGTGAAGTAGCCAACTATGGTAAAGATGATCCATA
TACAGCTACAGAAAGTAATTATCAATATCCATCAATGATTGCAAGCTCGGCTGTTGCTGGTTTGATTGGTTTGATTATTT
CTTATGCTATCGCAATTCCTCTTGGATCTGCTATGGCTCGCCACAAGAATACTTGGATTGATAGCTTCTCGACAGGTGCT
CTAACCTTCTTGCTTGCCCTTCCAACGATTGCCTTGGTTTACATCGTGCGCTTGATTGGATCATCTATTGGTCTGCCAGA
CTCATTCCCTATCTTGGGGGCTGGGGATTGGCGTTCCTATGTCTTGCCGGCAGTCATTCTAGGTTTGTTGGGAGCGCCAA
GTACAGCTATCTGGATCCGTCGTTACATGATCGACTTGCAATCTCAGGACTTTGTACGTTTTGCTCGTGCAAAAGGACTG
TCTGAAAAAGAAATTTCAAATAAACACATCTTTAAAAATGCCATGGTTCCTTTGGTTTCAGGTATTCCTGGTGCCGTAAT
CGGAGTTATTGGTGGTGCAACATTGACAGAAACGGTCTTCGCCTTCCCAGGTATGGGTAAAATGTTGATTGACTCTGTTA
AGGCATCAAACAACTCAATGGTAGTTGGTCTCGTCTTCATCTTCACATGTATTTCTATCTTCTCACTCTTTGTAGGAGAT
ATCTGGATGACCATGCTTGACCCACGTATTAAATTGACAGAGAAAGGAGGCAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F9P2Y7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

76.908

100

0.769
  amiC Streptococcus thermophilus LMG 18311

76.305

100

0.763
  amiC Streptococcus thermophilus LMD-9

75.904

100

0.759

Multiple sequence alignment