Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   EJF26_RS05825 Genome accession   NZ_CP034442
Coordinates   1161233..1162162 (-) Length   309 a.a.
NCBI ID   WP_001291316.1    Uniprot ID   A0A3R9S6I9
Organism   Streptococcus oralis subsp. dentisani strain F0392     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1156233..1167162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJF26_RS05800 - 1156474..1157037 (-) 564 WP_000185841.1 ECF transporter S component -
  EJF26_RS05805 - 1157450..1157953 (-) 504 WP_000181356.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  EJF26_RS05815 trkA 1158353..1159702 (+) 1350 WP_000706818.1 Trk system potassium transporter TrkA -
  EJF26_RS05820 - 1159706..1161145 (+) 1440 WP_001043423.1 TrkH family potassium uptake protein -
  EJF26_RS05825 amiF 1161233..1162162 (-) 930 WP_001291316.1 ATP-binding cassette domain-containing protein Regulator
  EJF26_RS05830 amiE 1162173..1163240 (-) 1068 WP_000159696.1 ABC transporter ATP-binding protein Regulator
  EJF26_RS05835 amiD 1163249..1164175 (-) 927 WP_000103696.1 oligopeptide ABC transporter permease OppC Regulator
  EJF26_RS05840 amiC 1164175..1165671 (-) 1497 WP_000759922.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35044.24 Da        Isoelectric Point: 6.9903

>NTDB_id=331351 EJF26_RS05825 WP_001291316.1 1161233..1162162(-) (amiF) [Streptococcus oralis subsp. dentisani strain F0392]
MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNNTSKGEIIFDGQKINGKKSHK
ESSDLIRRIQMIFQDPAASLNERATVDYIISEGLYNYHLFKDEEDRKEKVQKMIHEVGLLKEHLTRYPHEFSGGQRQRIG
IARALVMEPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPVHPYTQALLSAVPIPDPILERKKVLKVYDPDQHDYETDKPSMVEIRPGHYVWANQAEVARYKEALKK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=331351 EJF26_RS05825 WP_001291316.1 1161233..1162162(-) (amiF) [Streptococcus oralis subsp. dentisani strain F0392]
ATGTCTGAAAAATTAGTAGAAATTAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAGAAGTTTGTGGCGGTTAAAAA
CGCCAACTTCTTTATCAATAAGGGAGAAACTTTCTCTCTTGTAGGTGAGTCTGGTAGTGGGAAAACAACGATTGGTCGTG
CCATTATTGGTTTAAATAATACCAGTAAAGGAGAGATTATCTTTGATGGCCAGAAAATCAATGGAAAAAAATCTCACAAG
GAATCCTCAGACTTGATTCGTCGTATCCAAATGATTTTCCAGGACCCTGCAGCCAGCTTGAATGAGCGTGCAACAGTTGA
CTATATCATCTCTGAAGGTCTTTACAACTACCATTTGTTCAAAGACGAAGAAGATCGAAAAGAAAAAGTTCAAAAGATGA
TCCATGAAGTTGGACTTTTGAAAGAACACTTGACCCGCTATCCACACGAGTTTTCTGGTGGTCAACGTCAGCGTATCGGG
ATTGCCCGTGCCCTTGTAATGGAACCTGATTTTGTTATTGCAGATGAGCCAATTTCAGCCTTGGACGTATCAGTGCGTGC
GCAAGTCTTGAACTTGCTCAAGAAGTTCCAAAAAGAGTTGGGCTTGACCTATCTCTTTATCGCGCATGACTTGTCAGTTG
TTCGCTTTATCTCAGACCGTATCGCAGTTATTTATAAGGGAGTTATCGTTGAAGTGGCGGAGACAGAGGAGTTGTTTAAC
AATCCTGTCCACCCATACACTCAGGCGCTTCTATCTGCTGTACCGATTCCAGATCCAATCTTGGAACGCAAGAAGGTCTT
GAAAGTTTACGATCCTGACCAACATGACTATGAGACAGACAAGCCATCTATGGTAGAAATTCGTCCAGGTCACTATGTTT
GGGCTAACCAAGCGGAAGTTGCTCGTTATAAAGAAGCTCTTAAAAAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3R9S6I9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

85.113

100

0.851
  amiF Streptococcus thermophilus LMG 18311

84.142

100

0.841
  amiF Streptococcus thermophilus LMD-9

83.819

100

0.838

Multiple sequence alignment