Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   EJF26_RS05835 Genome accession   NZ_CP034442
Coordinates   1163249..1164175 (-) Length   308 a.a.
NCBI ID   WP_000103696.1    Uniprot ID   -
Organism   Streptococcus oralis subsp. dentisani strain F0392     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1158249..1169175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJF26_RS05815 trkA 1158353..1159702 (+) 1350 WP_000706818.1 Trk system potassium transporter TrkA -
  EJF26_RS05820 - 1159706..1161145 (+) 1440 WP_001043423.1 TrkH family potassium uptake protein -
  EJF26_RS05825 amiF 1161233..1162162 (-) 930 WP_001291316.1 ATP-binding cassette domain-containing protein Regulator
  EJF26_RS05830 amiE 1162173..1163240 (-) 1068 WP_000159696.1 ABC transporter ATP-binding protein Regulator
  EJF26_RS05835 amiD 1163249..1164175 (-) 927 WP_000103696.1 oligopeptide ABC transporter permease OppC Regulator
  EJF26_RS05840 amiC 1164175..1165671 (-) 1497 WP_000759922.1 ABC transporter permease Regulator
  EJF26_RS05845 amiA3 1165738..1167717 (-) 1980 WP_000742240.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34632.72 Da        Isoelectric Point: 9.5307

>NTDB_id=331353 EJF26_RS05835 WP_000103696.1 1163249..1164175(-) (amiD) [Streptococcus oralis subsp. dentisani strain F0392]
MSTIDKEKFQFVKRDDFASETIDAPAYSYWGSVFRQFLKKKSTVVMLGILVAIILMSFIYPMFSKFDFNDVSKVNDFSAR
FIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISVIATFINLVIGVIVGGIWGISKSVDRVMMEVYNIISNIPSLLIVIV
LTYSIGAGFWNLIFAMSVTTWIGIAYMIRIQIMRYRDLEYNLASQTLGTPTFKIIVKNIMPQLVSVIVSTMTLMLPSFIS
YEAFLSFFGLGLPVTVPSLGRLISDYSQNVTTNAYLFWIPLTTLILVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=331353 EJF26_RS05835 WP_000103696.1 1163249..1164175(-) (amiD) [Streptococcus oralis subsp. dentisani strain F0392]
ATGTCAACAATCGATAAAGAAAAATTTCAGTTCGTAAAACGTGACGATTTTGCCTCTGAAACAATTGATGCTCCTGCCTA
TTCATACTGGGGTTCTGTATTTAGACAATTTCTAAAGAAAAAATCAACAGTCGTTATGTTGGGGATTTTGGTAGCCATTA
TCCTGATGAGCTTTATTTACCCAATGTTCTCGAAGTTTGACTTTAACGATGTAAGCAAGGTCAATGACTTTTCTGCTCGT
TTTATCAAACCAAACGCTGAACATTGGTTTGGTACAGACAGCAATGGTAAATCCTTGTTTGACGGGGTTTGGTTTGGTGC
GCGTAATTCAATTCTTATCTCTGTCATTGCCACTTTTATCAACCTTGTGATCGGGGTTATTGTTGGTGGGATTTGGGGGA
TTTCAAAATCCGTTGACCGCGTCATGATGGAAGTTTATAACATTATTTCAAACATTCCATCTCTCTTGATTGTCATTGTC
TTGACTTACTCAATTGGTGCTGGTTTCTGGAATTTGATTTTTGCCATGAGTGTGACAACTTGGATTGGGATTGCTTATAT
GATTCGTATCCAAATCATGCGTTACCGTGACTTGGAATACAACCTCGCTTCACAAACACTTGGAACACCAACCTTTAAAA
TCATCGTTAAAAATATCATGCCACAATTGGTATCTGTTATTGTTTCTACAATGACCTTGATGTTGCCAAGCTTCATCTCT
TATGAAGCCTTCCTTTCCTTCTTTGGATTGGGATTACCTGTAACAGTGCCAAGTTTGGGACGTTTGATCTCAGATTACTC
ACAAAACGTTACGACCAACGCTTACTTGTTCTGGATTCCGTTGACAACCTTGATCTTGGTATCCCTATCTCTTTTCGTTG
TTGGTCAAAACCTAGCGGACGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-75)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(123-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

84.091

100

0.841
  amiD Streptococcus thermophilus LMG 18311

82.468

100

0.825
  amiD Streptococcus thermophilus LMD-9

82.468

100

0.825

Multiple sequence alignment