Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   FS611_RS11775 Genome accession   NZ_CP042350
Coordinates   2294183..2295610 (+) Length   475 a.a.
NCBI ID   WP_000980612.1    Uniprot ID   -
Organism   Escherichia coli strain RM10410     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2289183..2300610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FS611_RS11735 (FS611_11730) yeeW 2289367..2289561 (+) 195 WP_000988600.1 DUF5983 family protein -
  FS611_RS11740 (FS611_11735) - 2289607..2289687 (+) 81 Protein_2272 hypothetical protein -
  FS611_RS27200 (FS611_11740) - 2289976..2290149 (-) 174 WP_032082634.1 transposase domain-containing protein -
  FS611_RS27205 (FS611_11745) - 2290176..2290358 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  FS611_RS11755 (FS611_11750) tmaR 2290459..2290788 (-) 330 WP_000450409.1 DUF496 family protein -
  FS611_RS11760 (FS611_11755) yeeA 2290960..2292018 (-) 1059 WP_001200905.1 FUSC family protein -
  FS611_RS11765 (FS611_11760) sbmC 2292216..2292689 (-) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  FS611_RS11770 (FS611_11765) dacD 2292808..2293974 (-) 1167 WP_001310935.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  FS611_RS11775 (FS611_11770) sbcB 2294183..2295610 (+) 1428 WP_000980612.1 exodeoxyribonuclease I Machinery gene
  FS611_RS11780 (FS611_11775) tsuB 2295653..2295880 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  FS611_RS11785 (FS611_11780) tsuA 2295894..2296952 (-) 1059 WP_000492310.1 thiosulfate utilization transporter TsuA/YeeE -
  FS611_RS11790 (FS611_11785) plaP 2297131..2298489 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  FS611_RS11795 (FS611_11790) yoeI 2298479..2298541 (-) 63 WP_010723108.1 membrane protein YoeI -
  FS611_RS11800 (FS611_11795) yeeY 2298756..2299685 (-) 930 WP_000803360.1 LysR substrate-binding domain-containing protein -
  FS611_RS11805 (FS611_11800) yeeZ 2299731..2300555 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54486.75 Da        Isoelectric Point: 5.4700

>NTDB_id=331352 FS611_RS11775 WP_000980612.1 2294183..2295610(+) (sbcB) [Escherichia coli strain RM10410]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLRILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=331352 FS611_RS11775 WP_000980612.1 2294183..2295610(+) (sbcB) [Escherichia coli strain RM10410]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTGCCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAGAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTATGCTGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583

Multiple sequence alignment