Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   EJF26_RS05860 Genome accession   NZ_CP034442
Coordinates   1169715..1170539 (-) Length   274 a.a.
NCBI ID   WP_001036792.1    Uniprot ID   -
Organism   Streptococcus oralis subsp. dentisani strain F0392     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1164715..1175539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJF26_RS05845 amiA3 1165738..1167717 (-) 1980 WP_000742240.1 peptide ABC transporter substrate-binding protein Regulator
  EJF26_RS05855 - 1168244..1169575 (-) 1332 WP_000390012.1 hemolysin family protein -
  EJF26_RS05860 endA 1169715..1170539 (-) 825 WP_001036792.1 DNA/RNA non-specific endonuclease Machinery gene
  EJF26_RS05865 - 1170576..1170767 (-) 192 WP_000791880.1 DNA-directed RNA polymerase subunit beta -
  EJF26_RS05870 murA 1170757..1172037 (-) 1281 WP_000411896.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  EJF26_RS05875 - 1172060..1172290 (-) 231 WP_080563327.1 DUF1146 family protein -
  EJF26_RS05880 sepM 1172346..1173383 (-) 1038 WP_000730768.1 SepM family pheromone-processing serine protease Regulator
  EJF26_RS05885 coaD 1173367..1173855 (-) 489 WP_001280709.1 pantetheine-phosphate adenylyltransferase -
  EJF26_RS05890 rsmD 1173845..1174384 (-) 540 WP_000706947.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  EJF26_RS05895 asnA 1174449..1175441 (-) 993 WP_000747987.1 aspartate--ammonia ligase -

Sequence

Protein


Download         Length: 274 a.a.        Molecular weight: 29983.75 Da        Isoelectric Point: 9.9861

>NTDB_id=331356 EJF26_RS05860 WP_001036792.1 1169715..1170539(-) (endA) [Streptococcus oralis subsp. dentisani strain F0392]
MNKKTRQTLVGLLIFLLLAAGSYYIKQMQSTSNTPKTKVSQKKQASEAPSQELAESVLTESIKNQIKGGLEWNGAGAFVV
NGNKTNLDAKVSSKPYADNKIKPVGKETVPTVANALLSKATRQYKNREETGNGSTSWTPPGWHQVKNLKGIYTHAVDRGH
LLGYALIGGLDGFDASTSNPKNIAVQTAWANQAQAEDSTGQNYYESLVRKALDQNKRVRYRVTLHYATNEDLVPSASQIE
AKSSDGELEFNVLIPNVQKGIQLDYRTGQVTVIN

Nucleotide


Download         Length: 825 bp        

>NTDB_id=331356 EJF26_RS05860 WP_001036792.1 1169715..1170539(-) (endA) [Streptococcus oralis subsp. dentisani strain F0392]
ATGAACAAAAAAACGAGACAGACACTAGTAGGGTTACTTATATTCTTACTCTTGGCTGCTGGAAGCTATTATATCAAGCA
GATGCAGTCGACATCAAACACGCCTAAAACCAAAGTTAGTCAGAAAAAACAAGCTTCAGAAGCTCCCAGTCAGGAGTTGG
CAGAAAGTGTCTTAACCGAGTCAATCAAGAACCAAATAAAAGGTGGTTTAGAATGGAATGGGGCAGGTGCCTTTGTCGTC
AATGGTAATAAAACCAATCTAGATGCTAAGGTTTCTAGCAAACCCTATGCGGATAATAAAATAAAACCAGTCGGGAAAGA
GACCGTCCCAACTGTTGCCAATGCCCTCTTATCCAAAGCGACTCGGCAATATAAGAATCGTGAAGAGACTGGCAATGGAT
CCACCTCTTGGACTCCACCAGGGTGGCATCAGGTCAAGAATCTAAAGGGAATCTATACACATGCAGTTGATAGAGGACAC
CTGCTGGGCTATGCCTTGATAGGTGGTTTGGATGGTTTTGATGCCTCTACCAGCAATCCCAAGAACATTGCAGTCCAGAC
AGCTTGGGCGAATCAAGCGCAGGCTGAAGATTCGACTGGTCAGAACTATTATGAGAGTTTGGTTAGGAAAGCCTTGGATC
AGAATAAGAGAGTCCGTTACCGCGTGACACTCCACTATGCGACAAATGAGGATTTGGTTCCATCTGCTTCACAAATCGAA
GCCAAGTCTTCGGATGGAGAATTGGAATTCAACGTCCTGATCCCAAATGTTCAAAAGGGCATCCAGCTTGATTACCGAAC
AGGTCAAGTCACGGTGATAAACTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(76-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

88.971

99.27

0.883
  endA Streptococcus pneumoniae D39

88.971

99.27

0.883
  endA Streptococcus pneumoniae R6

88.971

99.27

0.883
  endA Streptococcus pneumoniae TIGR4

88.971

99.27

0.883

Multiple sequence alignment