Detailed information NTG0330879

Bioinformatically predicted

Overview

• Name: clpP
• Type: Regulator
• Locus tag: CG010_RS04425
• Genome accession: NZ_CP042274
• Coordinates: 901955..902587 (+)
• Length: 210 a.a.
• NCBI ID: WP_003521529.1
• Uniprot ID: A0A822V5P2
• Organism: Agrobacterium tumefaciens strain 186
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 896955..907587

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CG010_RS04400 (CG010_004600)	-	897372..897713 (+)	342	WP_060724199.1	cupin domain-containing protein	-
CG010_RS04405 (CG010_004605)	-	897734..898048 (-)	315	WP_060724092.1	helix-turn-helix domain-containing protein	-
CG010_RS04410 (CG010_004610)	-	898174..898908 (+)	735	WP_233283370.1	SDR family oxidoreductase	-
CG010_RS04415 (CG010_004615)	-	898929..900182 (-)	1254	WP_060726153.1	cytochrome P450	-
CG010_RS04420 (CG010_004620)	-	900255..901502 (-)	1248	WP_099085475.1	GGDEF domain-containing protein	-
CG010_RS04425 (CG010_004625)	clpP	901955..902587 (+)	633	WP_003521529.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
CG010_RS04430 (CG010_004630)	clpX	902881..904158 (+)	1278	WP_003496489.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
CG010_RS04435 (CG010_004640)	lon	904573..906990 (+)	2418	WP_003502358.1	endopeptidase La	-
CG010_RS04440 (CG010_004645)	hupB	907280..907555 (+)	276	WP_003502360.1	DNA-binding protein HupB	-

Sequence

Protein

• Length: 210 a.a.
• Molecular weight: 23254.80 Da
• Isoelectric Point: 6.1201

>NTDB_id=330879 CG010_RS04425 WP_003521529.1 901955..902587(+) (clpP) [Agrobacterium tumefaciens strain 186]
MKNPVDTAMALVPMVVEQTNRGERSYDIFSRLLKERIIFLTGPVEDQMASLVCAQLLFLEAENPKKEIALYINSPGGVVT
AGMAIYDTMQFIRPAVSTLCVGQAASMGSLLLAAGEKGMRFATPNARIMVHQPSGGFQGQASDIERHARDIIKMKRRLNE
VYVKHTGRTLEEVEKTLDRDHFMDADEAKDWGVIDKILTSRQEIEGAAAN

Nucleotide

• Length: 633 bp

>NTDB_id=330879 CG010_RS04425 WP_003521529.1 901955..902587(+) (clpP) [Agrobacterium tumefaciens strain 186]
ATGAAAAATCCAGTTGATACCGCCATGGCTCTGGTGCCGATGGTCGTAGAGCAGACCAATCGCGGCGAACGCTCCTACGA
CATATTTTCCCGTCTTCTCAAGGAACGCATCATTTTCCTCACCGGTCCGGTGGAAGACCAGATGGCGTCGCTCGTCTGCG
CGCAGCTTCTTTTCCTCGAGGCTGAAAACCCGAAGAAGGAAATCGCGCTCTACATCAATTCGCCGGGTGGCGTCGTGACC
GCCGGCATGGCGATCTACGATACGATGCAGTTCATCCGCCCTGCGGTTTCCACGCTCTGCGTCGGTCAGGCCGCGTCCAT
GGGCTCGCTGCTTCTGGCTGCCGGGGAAAAGGGAATGCGCTTCGCCACCCCGAACGCCCGCATCATGGTTCACCAGCCGT
CCGGCGGTTTCCAGGGCCAGGCATCGGATATCGAGCGCCACGCCCGTGACATCATCAAGATGAAGCGTCGCCTGAATGAA
GTCTACGTGAAGCATACTGGCCGCACGCTCGAAGAGGTTGAAAAAACCCTTGATCGCGACCATTTCATGGATGCAGACGA
GGCGAAGGACTGGGGCGTGATCGACAAGATCCTGACCTCGCGCCAGGAAATCGAAGGCGCCGCCGCGAATTGA

Domains

Predicted by InterProScan.

• Clp protease (CLP_protease) (21-200)

3D structure

• AlphaFold DB: A0A822V5P2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpP	Bacillus subtilis subsp. subtilis str. 168	60	92.857	0.557
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	56.915	89.524	0.51
clpP	Lactococcus lactis subsp. cremoris KW2	52.105	90.476	0.471
clpP	Streptococcus mutans UA159	49.231	92.857	0.457
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	50.526	90.476	0.457
clpP	Streptococcus pyogenes JRS4	48.969	92.381	0.452
clpP	Streptococcus pyogenes MGAS315	48.969	92.381	0.452
clpP	Streptococcus thermophilus LMG 18311	48.454	92.381	0.448
clpP	Streptococcus thermophilus LMD-9	48.454	92.381	0.448
clpP	Streptococcus pneumoniae Rx1	48.705	91.905	0.448
clpP	Streptococcus pneumoniae D39	48.705	91.905	0.448
clpP	Streptococcus pneumoniae R6	48.705	91.905	0.448
clpP	Streptococcus pneumoniae TIGR4	48.705	91.905	0.448