Detailed information NTG0330880

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: CG010_RS04430
• Genome accession: NZ_CP042274
• Coordinates: 902881..904158 (+)
• Length: 425 a.a.
• NCBI ID: WP_003496489.1
• Uniprot ID: A0A822V6D6
• Organism: Agrobacterium tumefaciens strain 186
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 897881..909158

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CG010_RS04410 (CG010_004610)	-	898174..898908 (+)	735	WP_233283370.1	SDR family oxidoreductase	-
CG010_RS04415 (CG010_004615)	-	898929..900182 (-)	1254	WP_060726153.1	cytochrome P450	-
CG010_RS04420 (CG010_004620)	-	900255..901502 (-)	1248	WP_099085475.1	GGDEF domain-containing protein	-
CG010_RS04425 (CG010_004625)	clpP	901955..902587 (+)	633	WP_003521529.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
CG010_RS04430 (CG010_004630)	clpX	902881..904158 (+)	1278	WP_003496489.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
CG010_RS04435 (CG010_004640)	lon	904573..906990 (+)	2418	WP_003502358.1	endopeptidase La	-
CG010_RS04440 (CG010_004645)	hupB	907280..907555 (+)	276	WP_003502360.1	DNA-binding protein HupB	-

Sequence

Protein

• Length: 425 a.a.
• Molecular weight: 46913.82 Da
• Isoelectric Point: 5.0788

>NTDB_id=330880 CG010_RS04430 WP_003496489.1 902881..904158(+) (clpX) [Agrobacterium tumefaciens strain 186]
MSKVSGSNGGDSKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKTSMVKSREGVPTPQDIIKILDEYV
IGQKQAKKILSVAVHNHYKRLAHASKNGDVELAKSNIMLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDV
ENIILKLLQSADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV
DTTNILFICGGAFAGLDKIISARGEKTSIGFGATVKAEDDRRVGEVLRELEPEDLVKFGLIPEFIGRLPVLATLEDLDED
ALIQILSEPKNALVKQYQRLFEMEDVELTFHEDALREIARKAITRKTGARGLRSIMEKILLDTMFELPTLEGVREVVISN
DVVSGVARPLYIYADRQEEKTNVSA

Nucleotide

• Length: 1278 bp

>NTDB_id=330880 CG010_RS04430 WP_003496489.1 902881..904158(+) (clpX) [Agrobacterium tumefaciens strain 186]
ATGAGCAAAGTCAGCGGCAGCAACGGCGGCGACTCTAAGAATACACTCTATTGTTCATTCTGCGGCAAGAGCCAGCACGA
AGTCCGGAAACTCATTGCCGGACCGACGGTATTCATCTGCGATGAATGCGTCGAATTGTGCATGGACATCATCCGTGAAG
AGAACAAGACATCGATGGTGAAGTCGCGCGAGGGTGTTCCCACCCCGCAGGACATCATCAAGATCCTCGACGAGTATGTC
ATCGGCCAGAAGCAGGCGAAGAAAATCCTGTCGGTGGCCGTTCACAACCACTACAAGCGCCTCGCGCACGCCTCCAAGAA
CGGCGATGTCGAGCTTGCGAAGTCGAACATCATGCTCGTCGGTCCGACGGGTTGCGGCAAGACCTATCTTGCCCAGACGC
TCGCCCGCATCATCGACGTTCCCTTCACCATGGCGGACGCAACGACGCTGACCGAAGCCGGTTATGTCGGCGAGGACGTG
GAAAACATCATCCTGAAGCTGTTGCAGTCTGCGGATTACAATGTCGAACGCGCCCAGCGCGGCATCGTCTATATCGACGA
AGTCGACAAGATTTCCCGCAAGTCGGACAACCCGTCCATCACGCGCGACGTGTCGGGCGAGGGCGTTCAGCAGGCGCTTC
TGAAGATCATGGAAGGCACGGTCGCTTCCGTTCCGCCGCAGGGCGGCCGCAAGCATCCGCAGCAGGAATTCCTGCAGGTG
GATACGACCAACATCCTGTTCATCTGCGGCGGCGCGTTTGCCGGCCTCGACAAGATCATCTCGGCCCGTGGTGAAAAGAC
CTCGATCGGCTTTGGTGCGACCGTCAAGGCGGAAGACGATCGCCGCGTTGGCGAGGTTCTGCGCGAACTGGAGCCCGAAG
ACCTGGTGAAGTTCGGTCTCATCCCGGAATTCATCGGCCGTCTGCCGGTTCTGGCGACGCTGGAGGACCTCGACGAGGAT
GCGCTGATCCAGATCCTGTCCGAGCCGAAGAACGCGCTGGTCAAGCAGTATCAGCGCCTGTTCGAGATGGAAGATGTGGA
ACTGACCTTCCACGAGGACGCTCTGCGCGAAATCGCCCGCAAGGCGATCACCCGCAAGACCGGCGCCCGCGGCCTGCGCT
CGATCATGGAGAAAATCCTGCTGGATACCATGTTCGAACTGCCGACGCTGGAAGGCGTACGCGAAGTGGTCATTTCCAAC
GACGTCGTCAGCGGCGTCGCCCGTCCGCTCTACATCTATGCGGATCGTCAGGAAGAAAAGACCAACGTTTCGGCCTGA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (317-389)

• AAA domain (Cdc48 subfamily) (AAA_2) (114-310)

• ClpX C4-type zinc finger (zf-C4_ClpX) (16-53)

3D structure

• AlphaFold DB: A0A822V6D6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	62.657	93.882	0.588
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	55.087	94.824	0.522