Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   SCA_RS05835 Genome accession   NC_012121
Coordinates   1179685..1180011 (-) Length   108 a.a.
NCBI ID   WP_015900413.1    Uniprot ID   -
Organism   Staphylococcus carnosus subsp. carnosus TM300     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1174685..1185011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCA_RS05805 (SCA_1160) gcvPA 1175198..1176544 (-) 1347 WP_015900409.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  SCA_RS05810 (SCA_1161) gcvT 1176565..1177659 (-) 1095 WP_015900410.1 glycine cleavage system aminomethyltransferase GcvT -
  SCA_RS05815 (SCA_1162) - 1177850..1178389 (-) 540 WP_015900411.1 shikimate kinase -
  SCA_RS05820 comGF 1178560..1179018 (-) 459 WP_158297486.1 competence type IV pilus minor pilin ComGF -
  SCA_RS12835 - 1178975..1179271 (-) 297 WP_041612977.1 hypothetical protein -
  SCA_RS05830 (SCA_1163) - 1179252..1179665 (-) 414 WP_231635362.1 prepilin-type cleavage/methylation domain-containing protein -
  SCA_RS05835 (SCA_1164) comGC 1179685..1180011 (-) 327 WP_015900413.1 competence type IV pilus major pilin ComGC Machinery gene
  SCA_RS05840 (SCA_1165) comGB 1180029..1181102 (-) 1074 WP_015900414.1 competence type IV pilus assembly protein ComGB -
  SCA_RS05845 (SCA_1166) comGA 1181074..1182048 (-) 975 WP_015900415.1 competence type IV pilus ATPase ComGA Machinery gene
  SCA_RS05850 (SCA_1167) - 1182119..1182742 (-) 624 WP_015900416.1 MBL fold metallo-hydrolase -
  SCA_RS05855 (SCA_1168) - 1182742..1183071 (-) 330 WP_015900417.1 MTH1187 family thiamine-binding protein -
  SCA_RS05860 (SCA_1169) - 1183071..1184057 (-) 987 WP_015900418.1 ROK family glucokinase -
  SCA_RS05865 (SCA_1170) - 1184057..1184257 (-) 201 WP_015900419.1 YqgQ family protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12186.36 Da        Isoelectric Point: 9.8933

>NTDB_id=33024 SCA_RS05835 WP_015900413.1 1179685..1180011(-) (comGC) [Staphylococcus carnosus subsp. carnosus TM300]
MKRYYFKLKNKNLKAFTLLEMLLVLLVISVLLILIIPNIAKQSEHVQATGCEAQQKMVNSQIEAYSLKNNRKPDSIDELV
TQGYLKEAQKKCKSGESITIKNGEASIS

Nucleotide


Download         Length: 327 bp        

>NTDB_id=33024 SCA_RS05835 WP_015900413.1 1179685..1180011(-) (comGC) [Staphylococcus carnosus subsp. carnosus TM300]
ATGAAAAGATATTACTTTAAATTGAAAAATAAAAACTTAAAAGCTTTTACATTGTTAGAAATGCTGCTTGTATTATTGGT
TATTAGTGTATTATTAATTTTAATTATACCGAATATCGCTAAACAATCTGAACATGTCCAGGCTACAGGTTGTGAGGCAC
AACAAAAAATGGTGAATAGTCAAATAGAAGCTTATTCACTTAAAAATAATAGAAAACCTGATAGTATTGATGAACTTGTT
ACACAAGGATATTTAAAAGAAGCTCAAAAGAAGTGTAAATCAGGAGAAAGTATAACAATAAAAAATGGTGAAGCATCAAT
TAGCTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

72.632

87.963

0.639
  comGC Staphylococcus aureus N315

72.632

87.963

0.639
  comGC/cglC Streptococcus mitis SK321

45.283

98.148

0.444
  comGC/cglC Streptococcus pneumoniae R6

44.34

98.148

0.435
  comGC/cglC Streptococcus pneumoniae D39

44.34

98.148

0.435
  comGC/cglC Streptococcus pneumoniae TIGR4

44.34

98.148

0.435
  comGC/cglC Streptococcus pneumoniae Rx1

44.34

98.148

0.435
  comGC/cglC Streptococcus mitis NCTC 12261

47.826

85.185

0.407
  comYC Streptococcus gordonii str. Challis substr. CH1

49.398

76.852

0.38
  comGC Bacillus subtilis subsp. subtilis str. 168

40.625

88.889

0.361

Multiple sequence alignment